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3SFF

Crystal Structure of Human HDAC8 Inhibitor Complex, an Amino Acid Derived Inhibitor

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Histone deacetylase 8polymer37841889.61UniProt (Q9BY41)
Pfam (PF00850)
Homo sapiens (human)HDAC8, HD8
2B
(A)
(2R)-2-amino-3-(3-chlorophenyl)-1-[4-(2,5-difluorobenzoyl)piperazin-1-yl]propan-1-onenon-polymer407.81Chemie (0DI)
3C, D
(A)
POTASSIUM IONnon-polymer39.12Chemie (K)
4E
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
5F
(A)
waterwater18.0234Chemie (HOH)
Sequence modifications
A: 1 - 377 (UniProt: Q9BY41)
PDBExternal DatabaseDetails
Ser 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight41889.6
Non-Polymers*Number of molecules4
Total formula weight551.4
All*Total formula weight42441.0
*Water molecules are not included.

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PDB entries from 2025-06-18

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