3SEJ
Structural characterization of a GII.4 2004 norovirus variant (TCH05) bound to Secretor Lewis HBGA (LeB)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... | Capsid | polymer | 311 | 34331.1 | 10 | UniProt (Q5EGK8) Pfam (PF08435) In PDB | Norovirus Hu/GII.4/2004/NL | |
2 | K, L, M, N, O... | alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 999.9 | 8 | In PDB GlyTouCan (G09552LA) | |||
3 | water | water | 18.0 | 457 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J: 221 - 531 (UniProt: Q5EGK8)
PDB | External Database | Details |
---|---|---|
Thr 228 | Ser 228 | SEE REMARK 999 |
Ala 271 | Val 271 | SEE REMARK 999 |
Asp 282 | Asn 282 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 343311.2 | |
Branched | Number of molecules | 8 |
Total formula weight | 7999.3 | |
All* | Total formula weight | 351310.5 |