3SDA
Crystal structure of autoreactive-Valpha14-Vbeta6 NKT TCR in complex with CD1d-beta-galactosylceramide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Antigen-presenting glycoprotein CD1d1 | polymer | 302 | 34662.0 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (mouse) | |
2 | B | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (mouse) | |
3 | C | NKT TCR Valpha14 chain | polymer | 207 | 22779.2 | 1 | Pfam (PF09291) UniProt (by SIFTS) (P01848) In PDB | Mus musculus Homo sapiens (mouse human) | |
4 | D | NKT TCR autoreactive-Vbeta6 chain | polymer | 245 | 27635.9 | 1 | Mus musculus Homo sapiens (mouse human) | ||
5 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
6 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
7 | A | N-[(2S,3R)-1-(beta-D-galactopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]tetracosanamide | non-polymer | 812.3 | 1 | Chemie (GCY) | |||
8 | B | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
9 | water | water | 18.0 | 62 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
B: 1 - 99 (UniProt: P01887)
PDB | External Database | Details |
---|---|---|
His 201 | Asp 219 | SEE REMARK 999 |
Gly 280 | - | expression tag |
Ser 281 | - | expression tag |
Leu 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
Ile 285 | - | expression tag |
Leu 286 | - | expression tag |
Asp 287 | - | expression tag |
Ala 288 | - | expression tag |
Gln 289 | - | expression tag |
Lys 290 | - | expression tag |
Met 291 | - | expression tag |
Val 292 | - | expression tag |
Trp 293 | - | expression tag |
Asn 294 | - | expression tag |
His 295 | - | expression tag |
Arg 296 | - | expression tag |
His 297 | - | expression tag |
His 298 | - | expression tag |
His 299 | - | expression tag |
His 300 | - | expression tag |
His 301 | - | expression tag |
His 302 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ala 85 | Asp 105 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 96737.5 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 1346.8 | |
All* | Total formula weight | 98508.6 |