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3RZD

RNA Polymerase II Initiation Complex with a 5-nt RNA

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA-directed RNA polymerase II subunit RPB1polymer1733191821.61UniProt (P04050)
Pfam (PF04997)
Pfam (PF05001)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Pfam (PF04992)
Pfam (PF04990)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit 1, RNA polymerase II subunit B1, DNA-directed RNA polymerase III largest subunit, RNA polymerase II subunit B220
2B
(B)
DNA-directed RNA polymerase II subunit RPB2polymer1224138937.31UniProt (P08518)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF04566)
Pfam (PF04567)
Pfam (PF00562)
Pfam (PF04560)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit 2, B150, DNA-directed RNA polymerase II 140 kDa polypeptide
3C
(C)
DNA-directed RNA polymerase II subunit RPB3polymer31835330.51UniProt (P16370)
Pfam (PF01193)
Pfam (PF01000)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit 3, RNA polymerase II subunit B3, B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide
4D
(E)
DNA-directed RNA polymerases I, II, and III subunit RPABC1polymer21525117.11UniProt (P20434)
Pfam (PF03871)
Pfam (PF01191)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC1, ABC27, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide
5E
(F)
DNA-directed RNA polymerases I, II, and III subunit RPABC2polymer15517931.81UniProt (P20435)
Pfam (PF01192)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC2, ABC23, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide
6F
(H)
DNA-directed RNA polymerases I, II, and III subunit RPABC3polymer14616525.41UniProt (P20436)
Pfam (PF03870)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC3, ABC14.4, ABC14.5, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide
7G
(I)
DNA-directed RNA polymerase II subunit RPB9polymer12214308.21UniProt (P27999)
Pfam (PF02150)
Pfam (PF01096)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B9, B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide, DNA-directed RNA polymerase II subunit 9
8H
(J)
DNA-directed RNA polymerases I, II, and III subunit RPABC5polymer708290.71UniProt (P22139)
Pfam (PF01194)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC5, ABC10-beta, ABC8, DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide
9I
(K)
DNA-directed RNA polymerase II subunit RPB11polymer12013633.51UniProt (P38902)
Pfam (PF13656)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B11, B13.6, DNA-directed RNA polymerase II 13.6 kDa polypeptide
10J
(L)
DNA-directed RNA polymerases I, II, and III subunit RPABC4polymer707730.01UniProt (P40422)
Pfam (PF03604)
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC4, ABC10-alpha
11K
(R)
RNA (5'-R(*AP*GP*AP*GP*G)-3')polymer51649.11
12L
(T)
DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3')polymer298863.71
13M, N, P, Q, R...
(A, B, C, I, J...)
ZINC IONnon-polymer65.48Chemie (ZN)
14O
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight480138.8
Non-Polymers*Number of molecules9
Total formula weight547.6
All*Total formula weight480686.4
*Water molecules are not included.

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PDB entries from 2024-10-30

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