3RQD

Ideal Thiolate-Zinc Coordination Geometry in Depsipeptide Binding to Histone Deacetylase 8

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B	Histone deacetylase 8	polymer	389	43232.0	2	UniProt (Q9BY41) Pfam (PF00850) In PDB	Homo sapiens (human)	HD8
2	C, D	Largazole	polymer	5	550.7	2	BIRD (PRD_000785)	Symploca
3	A, B	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
4	A, B	POTASSIUM ION	non-polymer		39.1	4	Chemie (K)
5		water	water		18.0	504	Chemie (HOH)

Sequence modifications

A, B: 1 - 377 (UniProt: Q9BY41)

PDB	External Database	Details
Ile 378	-	expression tag
Glu 379	-	expression tag
Gly 380	-	expression tag
Arg 381	-	expression tag
Gly 382	-	expression tag
Ser 383	-	expression tag
His 384	-	expression tag
His 385	-	expression tag
His 386	-	expression tag
His 387	-	expression tag
His 388	-	expression tag
His 389	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	87565.4
Non-Polymers*	Number of molecules	6
	Total formula weight	287.2
All*	Total formula weight	87852.6

*Water molecules are not included.