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3RIT

Crystal structure of Dipeptide Epimerase from Methylococcus capsulatus complexed with Mg and dipeptide L-Arg-D-Lys

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D, E
(A, B, C, D, E)
Dipeptide epimerasepolymer35639092.15UniProt (Q607C7)
Pfam (PF02746)
Pfam (PF13378)
Methylococcus capsulatusPutative chloromuconate cycloisomerase
2EA, F, FA, G, GA...
(D, A, E, B, C)
SULFATE IONnon-polymer96.125Chemie (SO4)
3AA, KA, L, T, TA
(C, D, A, B, E)
ARGININEnon-polymer175.25Chemie (ARG)
4BA, LA, M, U, UA
(C, D, A, B, E)
D-LYSINEnon-polymer146.25Chemie (DLY)
5CA, MA, N, V, VA
(C, D, A, B, E)
MAGNESIUM IONnon-polymer24.35Chemie (MG)
6DA, NA, O, WA
(C, D, A, E)
PENTAETHYLENE GLYCOLnon-polymer238.34Chemie (1PE)
7AB, BB, XA, YA, ZA
(D, E, A, B, C)
waterwater18.0555Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight195460.6
Non-Polymers*Number of molecules44
Total formula weight5083.2
All*Total formula weight200543.8
*Water molecules are not included.

246031

PDB entries from 2025-12-10

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