3RIJ
Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | SC_2cx5 | polymer | 165 | 17348.7 | 4 | UniProt (Q5SHN1) Pfam (PF04073) | Thermus thermophilus | |
| 2 | E (C) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 3 | F, G, H, I (A, B, C, D) | water | water | 18.0 | 449 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 2 - 84 (UniProt: Q5SHN1)
A, B, C, D: 95 - 158 (UniProt: Q5SHN1)
| PDB | External Database | Details |
|---|---|---|
| Tyr 54 | Phe 54 | engineered mutation |
| Gly 55 | Val 55 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Asp 99 | Ala 99 | engineered mutation |
| Ala 100 | Ile 100 | engineered mutation |
| Leu 159 | - | insertion |
| Glu 160 | - | insertion |
| His 161 | - | expression tag |
| His 162 | - | expression tag |
| His 163 | - | expression tag |
| His 164 | - | expression tag |
| His 165 | - | expression tag |
| His 166 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 69394.9 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 92.1 | |
| All* | Total formula weight | 69487.0 |






