3RG1
Crystal structure of the RP105/MD-1 complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, E, I, M, B...) | CD180 molecule | polymer | 612 | 68867.0 | 8 | UniProt (A6QNK7) Pfam (PF18831) Pfam (PF13855) | Bos taurus (bovine) | RP105, radioprotective 105 |
| 2 | I, J, K, L, M... (C, D, G, H, K...) | LY86 protein | polymer | 147 | 16496.7 | 8 | UniProt (A4IFT3) Pfam (PF02221) | Bos taurus (bovine) | MD-1 |
| 3 | AA, CA, EA, Q, S... (a, c, e, Q, S...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 8 | In PDB GlyTouCan (G15407YE) | |||
| 4 | BA, DA, FA, R, T... (b, d, f, R, T...) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1397.2 | 8 | In PDB GlyTouCan (G61846BY) | |||
| 5 | GA, HA, IA, JA (D, H, L, P) | (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE | non-polymer | 751.0 | 4 | Chemie (PGT) | |||
| 6 | KA, LA, MA, NA, OA... (A, E, I, M, B...) | water | water | 18.0 | 37 | Chemie (HOH) |
Sequence modifications
A, E, I, M, B, F, J, N: 24 - 626 (UniProt: A6QNK7)
C, D, G, H, K, L, O, P: 21 - 159 (UniProt: A4IFT3)
| PDB | External Database | Details |
|---|---|---|
| Ala 22 | - | expression tag |
| Gly 23 | - | expression tag |
| Thr 627 | - | expression tag |
| His 628 | - | expression tag |
| Met 629 | - | expression tag |
| Leu 630 | - | expression tag |
| Val 631 | - | expression tag |
| Pro 632 | - | expression tag |
| Arg 633 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ala 20 | - | expression tag |
| Ala 160 | - | expression tag |
| Arg 161 | - | expression tag |
| Gly 162 | - | expression tag |
| Leu 163 | - | expression tag |
| Val 164 | - | expression tag |
| Pro 165 | - | expression tag |
| Arg 166 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 16 |
| Total formula weight | 682909.3 | |
| Branched | Number of molecules | 16 |
| Total formula weight | 15870.3 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 3004.1 | |
| All* | Total formula weight | 701783.7 |
