3RG1
Crystal structure of the RP105/MD-1 complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E, I, M, B... | CD180 molecule | polymer | 612 | 68867.0 | 8 | UniProt (A6QNK7) Pfam (PF18831) Pfam (PF13855) In PDB | Bos taurus (bovine) | RP105, radioprotective 105 |
2 | C, D, G, H, K... | LY86 protein | polymer | 147 | 16496.7 | 8 | UniProt (A4IFT3) Pfam (PF02221) In PDB | Bos taurus (bovine) | MD-1 |
3 | a, c, e, Q, S... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 8 | In PDB GlyTouCan (G15407YE) | |||
4 | b, d, f, R, T... | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1397.2 | 8 | In PDB GlyTouCan (G61846BY) | |||
5 | D, H, L, P | (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE | non-polymer | 751.0 | 4 | Chemie (PGT) | |||
6 | water | water | 18.0 | 37 | Chemie (HOH) |
Sequence modifications
A, E, I, M, B, F, J, N: 24 - 626 (UniProt: A6QNK7)
C, D, G, H, K, L, O, P: 21 - 159 (UniProt: A4IFT3)
PDB | External Database | Details |
---|---|---|
Ala 22 | - | expression tag |
Gly 23 | - | expression tag |
Thr 627 | - | expression tag |
His 628 | - | expression tag |
Met 629 | - | expression tag |
Leu 630 | - | expression tag |
Val 631 | - | expression tag |
Pro 632 | - | expression tag |
Arg 633 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ala 20 | - | expression tag |
Ala 160 | - | expression tag |
Arg 161 | - | expression tag |
Gly 162 | - | expression tag |
Leu 163 | - | expression tag |
Val 164 | - | expression tag |
Pro 165 | - | expression tag |
Arg 166 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 16 |
Total formula weight | 682909.3 | |
Branched | Number of molecules | 16 |
Total formula weight | 15870.3 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 3004.1 | |
All* | Total formula weight | 701783.7 |