3PQY
Crystal Structure of 6218 TCR in complex with the H2Db-PA224
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, F, K, P | H-2 class I histocompatibility antigen, D-B alpha chain | polymer | 275 | 32030.6 | 4 | UniProt (P01899) Pfam (PF00129) Pfam (PF07654) In PDB | Mus musculus (Mouse) | H-2D(B) |
2 | B, G, L, Q | Beta-2-microglobulin | polymer | 99 | 11704.4 | 4 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
3 | C, H, M, R | 10-mer peptide from RNA-directed RNA polymerase | polymer | 10 | 1186.3 | 4 | UniProt (by SIFTS) (P13175) In PDB | synthetic construct | |
4 | D, I, N, S | T cell receptor alpha variable 21-DV12,T-cell receptor, sp3.4 alpha chain | polymer | 195 | 21610.0 | 4 | UniProt (A0A075B6C4) UniProt (K7N5N2) Pfam (PF07686) Pfam (PF09291) In PDB | Mus musculus (Mouse) | alpha chain of the 6218-TCR |
5 | E, J, O, T | T cell receptor beta, variable 29,Human nkt tcr beta chain | polymer | 240 | 27575.9 | 4 | UniProt (A0A0G2LB96) UniProt (K7N5M4) Pfam (PF07686) Pfam (PF07654) In PDB | Mus musculus (Mouse) | beta chain of the 6218-TCR |
6 | water | water | 18.0 | 16 | Chemie (HOH) |
Sequence modifications
B, G, L, Q: 1 - 99 (UniProt: P01887)
D, I, N, S: 3 - 106 (UniProt: A0A075B6C4)
D, I, N, S: 127 - 213 (UniProt: K7N5N2)
E, J, O, T: 1 - 107 (UniProt: A0A0G2LB96)
E, J, O, T: 111 - 253 (UniProt: K7N5M4)
PDB | External Database | Details |
---|---|---|
Asp 85 | Ala 105 | variant |
PDB | External Database | Details |
---|---|---|
Ser 107 | - | linker |
Gly 108 | - | linker |
Gly 109 | - | linker |
Ser 110 | - | linker |
Asn 111 | - | linker |
Tyr 112 | - | linker |
Lys 113 | - | linker |
Leu 114 | - | linker |
Thr 115 | - | linker |
Phe 116 | - | linker |
Gly 117 | - | linker |
Lys 118 | - | linker |
Gly 119 | - | linker |
Thr 120 | - | linker |
Leu 121 | - | linker |
Leu 122 | - | linker |
Thr 123 | - | linker |
Val 124 | - | linker |
Thr 125 | - | linker |
Pro 126 | - | linker |
E, J, O, T: 1 - 107 (UniProt: A0A0G2LB96)
PDB | External Database | Details |
---|---|---|
Phe 108 | - | linker |
Gly 109 | - | linker |
Arg 110 | - | linker |
PDB | External Database | Details |
---|---|---|
Leu 123 | Thr 119 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 20 |
Total formula weight | 376428.8 | |
All* | Total formula weight | 376428.8 |