3OAX
Crystal structure of bovine rhodopsin with beta-ionone
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Rhodopsin | polymer | 349 | 39057.5 | 2 | UniProt (P02699) Pfam (PF10413) Pfam (PF00001) | Bos taurus (Bovine) | |
| 2 | C (C) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 3 | D, F (D, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 4 | E (E) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
| 5 | G, U (A, B) | RETINAL | non-polymer | 284.4 | 2 | Chemie (RET) PubChem (1070) PubChem (23254473) PubChem (177675058) PubChem (638015) PubChem (87082476) PubChem (87110449) PubChem (87110609) PubChem (88398773) PubChem (88407543) PubChem (5280490) PubChem (5353924) PubChem (5381765) PubChem (6436079) PubChem (6436082) PubChem (11426127) PubChem (12227253) PubChem (12227254) PubChem (12227256) PubChem (12227257) PubChem (12227258) PubChem (12227259) PubChem (12227269) PubChem (12227270) PubChem (12227271) PubChem (134688327) PubChem (140510408) PubChem (145826762) PubChem (169423542) PubChem (172878320) | |||
| 6 | H, I, V, W (A, B) | PALMITIC ACID | non-polymer | 256.4 | 4 | Chemie (PLM) | |||
| 7 | J, K, L, X, Y... (A, B) | MERCURY (II) ION | non-polymer | 200.6 | 6 | Chemie (HG) PubChem (26623) | |||
| 8 | AA, BA, CA, M, N... (B, A) | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) | |||
| 9 | EA, Q (B, A) | (4E,6E)-hexadeca-1,4,6-triene | non-polymer | 220.4 | 2 | Chemie (4E6) PubChem (52945223) PubChem (174048651) | |||
| 10 | FA, GA, R, S (B, A) | heptyl 1-thio-beta-D-glucopyranoside | non-polymer | 294.4 | 4 | Chemie (HTG) PubChem (17754029) PubChem (22844385) PubChem (71317209) PubChem (561567) PubChem (656917) PubChem (135074) PubChem (95858610) PubChem (96361182) PubChem (96361183) PubChem (97041763) PubChem (101138253) PubChem (10979306) PubChem (11335391) PubChem (11392262) | |||
| 11 | HA, T (B, A) | (3E)-4-(2,6,6-trimethylcyclohex-1-en-1-yl)but-3-en-2-one | non-polymer | 192.3 | 2 | Chemie (ID3) PubChem (26955) PubChem (638014) PubChem (12224082) | |||
| 12 | DA (B) | HEPTANE-1,2,3-TRIOL | non-polymer | 148.2 | 1 | Chemie (HTO) | |||
| 13 | IA, JA (A, B) | water | water | 18.0 | 105 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 348 (UniProt: P02699)
| PDB | External Database | Details |
|---|---|---|
| Ace 0 | - | acetylation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 78115.0 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 2184.0 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 5407.2 | |
| All* | Total formula weight | 85706.2 |
