3OAX
Crystal structure of bovine rhodopsin with beta-ionone
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Rhodopsin | polymer | 349 | 39057.5 | 2 | UniProt (P02699) Pfam (PF10413) Pfam (PF00001) | Bos taurus (Bovine) | |
| 2 | C (C) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 3 | D, F (D, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 4 | E (E) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
| 5 | G, U (A, B) | RETINAL | non-polymer | 284.4 | 2 | Chemie (RET) | |||
| 6 | H, I, V, W (A, B) | PALMITIC ACID | non-polymer | 256.4 | 4 | Chemie (PLM) | |||
| 7 | J, K, L, X, Y... (A, B) | MERCURY (II) ION | non-polymer | 200.6 | 6 | Chemie (HG) | |||
| 8 | AA, BA, CA, M, N... (B, A) | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) | |||
| 9 | EA, Q (B, A) | (4E,6E)-hexadeca-1,4,6-triene | non-polymer | 220.4 | 2 | Chemie (4E6) | |||
| 10 | FA, GA, R, S (B, A) | heptyl 1-thio-beta-D-glucopyranoside | non-polymer | 294.4 | 4 | Chemie (HTG) | |||
| 11 | HA, T (B, A) | (3E)-4-(2,6,6-trimethylcyclohex-1-en-1-yl)but-3-en-2-one | non-polymer | 192.3 | 2 | Chemie (ID3) | |||
| 12 | DA (B) | HEPTANE-1,2,3-TRIOL | non-polymer | 148.2 | 1 | Chemie (HTO) | |||
| 13 | IA, JA (A, B) | water | water | 18.0 | 105 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 348 (UniProt: P02699)
| PDB | External Database | Details |
|---|---|---|
| Ace 0 | - | acetylation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 78115.0 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 2184.0 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 5407.2 | |
| All* | Total formula weight | 85706.2 |
