3NXD
JC polyomavirus VP1 in complex with LSTc
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (C, B, A, D, E) | Major capsid protein VP1 | polymer | 272 | 30075.9 | 5 | UniProt (P03089) Pfam (PF00718) | JC polyomavirus (JCPyV) | Major structural protein VP1 |
| 2 | F, G (F, G) | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 998.9 | 2 | In PDB GlyTouCan (G83513YI) | |||
| 3 | H, J, K, N, P (C, B, A, D, E) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 4 | I, L, M, O, Q... (C, A, D, E) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
| 5 | S, T, U, V, W (C, B, A, D, E) | water | water | 18.0 | 946 | Chemie (HOH) |
Sequence modifications
C, B, A, D, E: 22 - 289 (UniProt: P03089)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150379.3 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1997.8 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 832.9 | |
| All* | Total formula weight | 153210.0 |
