3NWD
Glycoprotein B from Herpes simplex virus type 1, Y179S mutant, low-pH
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (B, A, C, D) | Envelope glycoprotein B | polymer | 703 | 78797.2 | 4 | UniProt (P06437) Pfam (PF17416) Pfam (PF17417) Pfam (PF00606) | Human herpesvirus 1 (HHV-1) | gB, gB-1, gB1 |
| 2 | E, F (E, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 3 | G, H, I, J, K... (B, A, C, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 9 | Chemie (NAG) | |||
| 4 | L, R (A, D) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 5 | P (C) | MESO-ERYTHRITOL | non-polymer | 122.1 | 1 | Chemie (MRY) | |||
| 6 | S, T, U, V (B, A, C, D) | water | water | 18.0 | 84 | Chemie (HOH) |
Sequence modifications
B, A, C, D: 30 - 730 (UniProt: P06437)
| PDB | External Database | Details |
|---|---|---|
| Asp 28 | - | expression tag |
| Pro 29 | - | expression tag |
| Ala 58 | Pro 58 | SEE REMARK 999 |
| Ser 179 | Tyr 179 | engineered mutation |
| Ser 313 | Thr 313 | SEE REMARK 999 |
| Leu 443 | Gln 443 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 315188.8 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 848.8 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 2183.9 | |
| All* | Total formula weight | 318221.5 |
