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3LY0

Crystal structure of metallo peptidase from Rhodobacter sphaeroides liganded with phosphinate mimic of dipeptide L-Ala-D-Ala

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Dipeptidase AC. Metallo peptidase. MEROPS family M19polymer36440166.72UniProt (Q3IZQ3)
Pfam (PF01244)
Rhodobacter sphaeroides
2C, F
(A, B)
(2R)-3-[(R)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]-2-methylpropanoic acidnon-polymer195.22Chemie (LY0)
3D, E, G, H
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
4I, J
(A, B)
waterwater18.0638Chemie (HOH)
Sequence modifications
A, B: 4 - 354 (UniProt: Q3IZQ3)
PDBExternal DatabaseDetails
Met -1-expression tag
Ser 0-expression tag
Leu 1-expression tag
Ser 2-expression tag
Asp 3-expression tag
Thr 352Ser 352conflict
Glu 355-expression tag
Gly 356-expression tag
His 357-expression tag
His 358-expression tag
His 359-expression tag
His 360-expression tag
His 361-expression tag
His 362-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight80333.3
Non-Polymers*Number of molecules6
Total formula weight651.9
All*Total formula weight80985.3
*Water molecules are not included.

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PDB entries from 2025-06-25

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