3L9R
Crystal structure of bovine CD1b3 with endogenously bound ligands
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, C, E, G) | CD1b3 | polymer | 283 | 31660.4 | 4 | UniProt (Q1L1H6) Pfam (PF16497) Pfam (PF07654) | Bos taurus (bovine cow domestic cattle domestic cow) | |
| 2 | B, D, F, H (B, D, F, H) | Beta-2-microglobulin | polymer | 98 | 11653.1 | 4 | UniProt (P01888) Pfam (PF07654) | Bos taurus (bovine cow domestic cattle domestic cow) | Lactollin |
| 3 | I (I) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1041.0 | 1 | In PDB GlyTouCan (G17601US) | |||
| 4 | J, K, L (J, K, L) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 878.8 | 3 | In PDB GlyTouCan (G92953ND) | |||
| 5 | M, P, V, W, Z (A, C, E, G) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
| 6 | N, Y (A, E) | (2S)-3-(octadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate | non-polymer | 788.1 | 2 | Chemie (L9R) | |||
| 7 | AA, BA, CA, DA, O... (G, A, C, E) | GLYCEROL | non-polymer | 92.1 | 9 | Chemie (GOL) | |||
| 8 | FA, Q (G, C) | (1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate | non-polymer | 746.0 | 2 | Chemie (L9Q) | |||
| 9 | EA, T (G, C) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 10 | GA, HA, IA, JA, KA... (A, B, C, D, E...) | water | water | 18.0 | 506 | Chemie (HOH) |
Sequence modifications
A, C, E, G: 1 - 277 (UniProt: Q1L1H6)
| PDB | External Database | Details |
|---|---|---|
| His 278 | - | expression tag |
| His 279 | - | expression tag |
| His 280 | - | expression tag |
| His 281 | - | expression tag |
| His 282 | - | expression tag |
| His 283 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 173254.2 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 3677.4 | |
| Non-Polymers* | Number of molecules | 20 |
| Total formula weight | 5074.1 | |
| All* | Total formula weight | 182005.8 |
