3JCU
Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, Z (A, a) | Photosystem II protein D1 | polymer | 344 | 38134.4 | 2 | UniProt (P69560) Pfam (PF00124) | Spinacia oleracea (spinach) | |
| 2 | AA, B (B, b) | Photosystem II CP47 reaction center protein | polymer | 508 | 56207.9 | 2 | UniProt (P04160) Pfam (PF00421) | Spinacia oleracea (spinach) | |
| 3 | BA, C (C, c) | Photosystem II CP43 reaction center protein | polymer | 473 | 51880.6 | 2 | UniProt (P06003) Pfam (PF00421) | Spinacia oleracea (spinach) | |
| 4 | CA, D (D, d) | Photosystem II D2 protein | polymer | 353 | 39535.2 | 2 | UniProt (P06005) Pfam (PF00124) | Spinacia oleracea (spinach) | |
| 5 | DA, E (E, e) | Cytochrome b559 subunit alpha | polymer | 83 | 9393.5 | 2 | UniProt (P69383) Pfam (PF00283) Pfam (PF00284) | Spinacia oleracea (spinach) | |
| 6 | EA, F (F, f) | Cytochrome b559 subunit beta | polymer | 39 | 4502.4 | 2 | UniProt (P60128) Pfam (PF00283) | Spinacia oleracea (spinach) | |
| 7 | FA, G, MA, N, WA... (G, N, Y, g, n...) | Chlorophyll a-b binding protein, chloroplastic | polymer | 267 | 28449.4 | 6 | UniProt (P12333) Pfam (PF00504) | Spinacia oleracea (spinach) | |
| 8 | GA, H (H, h) | Photosystem II reaction center protein H | polymer | 73 | 7735.0 | 2 | UniProt (P05146) Pfam (PF00737) | Spinacia oleracea (spinach) | |
| 9 | HA, I (I, i) | Protein Photosystem II reaction center protein I | polymer | 36 | 4170.9 | 2 | UniProt (P62103) Pfam (PF02532) | Spinacia oleracea (spinach) | |
| 10 | IA, J (J, j) | Photosystem II reaction center protein J | polymer | 40 | 4117.8 | 2 | UniProt (Q9M3L2) Pfam (PF01788) | Spinacia oleracea (spinach) | |
| 11 | JA, K (K, k) | Photosystem II reaction center protein K | polymer | 59 | 6751.0 | 2 | UniProt (P12163) Pfam (PF02533) | Spinacia oleracea (spinach) | |
| 12 | KA, L (L, l) | Protein Photosystem II reaction center protein L | polymer | 38 | 4498.1 | 2 | UniProt (P60150) Pfam (PF02419) | Spinacia oleracea (spinach) | |
| 13 | LA, M (M, m) | Photosystem II reaction center protein M | polymer | 34 | 3783.5 | 2 | UniProt (P62112) Pfam (PF05151) | Spinacia oleracea (spinach) | |
| 14 | NA, O (O, o) | Oxygen-evolving enhancer protein 1, chloroplastic | polymer | 332 | 35207.4 | 2 | UniProt (P12359) Pfam (PF01716) | Spinacia oleracea (spinach) | |
| 15 | OA, P (P, p) | Oxygen-evolving enhancer protein 2, chloroplastic | polymer | 267 | 28495.9 | 2 | UniProt (P12302) Pfam (PF01789) | Spinacia oleracea (spinach) | |
| 16 | PA, Q (Q, q) | Oxygen-evolving enhancer protein 3, chloroplastic | polymer | 232 | 24884.4 | 2 | UniProt (P12301) Pfam (PF05757) | Spinacia oleracea (spinach) | |
| 17 | QA, R (R, r) | Chlorophyll A-B Binding protein 29 kD (CP29) | polymer | 243 | 26735.3 | 2 | UniProt (F2Z293) | Spinacia oleracea (spinach) | |
| 18 | RA, S (S, s) | Chlorophyll A-B Binding protein 26 kD (CP26) | polymer | 295 | 31341.8 | 2 | UniProt (A0A0K9QUQ7) | Spinacia oleracea (spinach) | |
| 19 | SA, T (T, t) | Photosystem II Reaction Center protein Tc | polymer | 33 | 3825.6 | 2 | UniProt (P61840) Pfam (PF01405) | Spinacia oleracea (spinach) | |
| 20 | TA, U (U, u) | Photosystem II Reaction Center Tn protein | polymer | 99 | 10676.6 | 2 | UniProt (A0A0K9RHP1) | Spinacia oleracea (spinach) | |
| 21 | UA, V (W, w) | Photosystem II reaction center W protein, chloroplastic | polymer | 137 | 14186.1 | 2 | UniProt (Q41387) Pfam (PF07123) | Spinacia oleracea (spinach) | |
| 22 | VA, W (X, x) | Photosystem II Reaction Center X protein | polymer | 117 | 11958.1 | 2 | UniProt (A0A0K9RTU3) | Spinacia oleracea (spinach) | |
| 23 | XA, Y (Z, z) | Photosystem II reaction center protein Z | polymer | 62 | 6541.7 | 2 | UniProt (Q9M3M6) Pfam (PF01737) | Spinacia oleracea (spinach) | |
| 24 | DH, YA (a, A) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 25 | EH, ZA (a, A) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 26 | AB, BB, FH, GH (A, a) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) PubChem (312) | |||
| 27 | AC, AG, AI, AK, AL... (B, S, b, g, n...) | CHLOROPHYLL A | non-polymer | 893.5 | 156 | Chemie (CLA) | |||
| 28 | FB, GB, KH, LH (A, a) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 29 | AJ, BC, BJ, DC, DJ... (c, B, D, H, b...) | BETA-CAROTENE | non-polymer | 536.9 | 20 | Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (86765360) PubChem (5315709) PubChem (5280489) PubChem (91827292) PubChem (92863345) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (124919640) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (6477957) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (146673260) PubChem (152743364) PubChem (124919639) PubChem (160505766) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 30 | FC, JB, KI, LB, OH... (B, A, b, a) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 6 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (5459390) PubChem (102201395) PubChem (134765349) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 31 | AD, CH, GC, GJ, HN... (C, Z, B, c, z...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 10 | Chemie (LMG) | |||
| 32 | BD, CJ, EJ, FJ, GE... (C, c, H, h) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 8 | Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (448441) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 33 | CD, HJ (D, d) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 34 | GD, MJ (D, d) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 2 | Chemie (PL9) PubChem (23304240) PubChem (20286) PubChem (21881166) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) | |||
| 35 | AF, BH, EE, FL, GN... (N, Y, G, n, y...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 18 | Chemie (LHG) PubChem (46936292) PubChem (446440) PubChem (73416066) PubChem (65144) PubChem (9547104) PubChem (13305396) PubChem (11846227) PubChem (138986743) | |||
| 36 | LD, QJ (F, f) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 37 | BM, CM, DM, FF, GF... (s, R, N, Y, r...) | CHLOROPHYLL B | non-polymer | 907.5 | 50 | Chemie (CHL) | |||
| 38 | AE, BE, BL, CL, CN... (G, n, y, S, g...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 18 | Chemie (LUT) PubChem (24728610) PubChem (177565809) PubChem (25202165) PubChem (177696530) PubChem (44481270) PubChem (46835684) PubChem (25245095) PubChem (53477744) PubChem (53477774) PubChem (181579) PubChem (441664) PubChem (53477760) PubChem (57922343) PubChem (31380) PubChem (90820720) PubChem (448437) PubChem (89305995) PubChem (91240120) PubChem (91519940) PubChem (91007743) PubChem (91330154) PubChem (91467158) PubChem (5281243) PubChem (93535598) PubChem (94424894) PubChem (100935514) PubChem (101351907) PubChem (101351906) PubChem (5368396) PubChem (6325550) PubChem (6433159) PubChem (93971688) PubChem (93971689) PubChem (93971690) PubChem (93971691) PubChem (94424892) PubChem (94424893) PubChem (131801656) PubChem (101351905) PubChem (101351908) PubChem (101351909) PubChem (101351910) PubChem (101727094) PubChem (102093134) PubChem (102514741) PubChem (12085680) PubChem (10210008) PubChem (10257404) PubChem (139335388) PubChem (12359017) PubChem (16061195) PubChem (16061196) PubChem (16061204) PubChem (162679657) PubChem (162945700) PubChem (162945708) PubChem (125183271) PubChem (125183272) PubChem (125183273) PubChem (125183613) PubChem (125183614) PubChem (126970006) PubChem (175679236) PubChem (175679086) PubChem (131801655) PubChem (139595700) PubChem (152743345) PubChem (156583347) PubChem (159139983) PubChem (162945701) PubChem (162945702) PubChem (162945703) PubChem (162945704) PubChem (162945705) PubChem (162945706) PubChem (162945707) PubChem (162945709) PubChem (169423521) PubChem (169954357) PubChem (172748694) | |||
| 39 | CE, DL, EN, HK, PF... (G, n, y, g, R...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 8 | Chemie (XAT) PubChem (24970201) PubChem (46936684) PubChem (53477762) PubChem (179930) PubChem (51346155) PubChem (448438) PubChem (92096) PubChem (5282218) PubChem (5315242) PubChem (98049827) PubChem (101341889) PubChem (101341891) PubChem (6852159) PubChem (126456015) PubChem (6384269) PubChem (6442428) PubChem (98049828) PubChem (101341888) PubChem (101341890) PubChem (101341892) PubChem (101341893) PubChem (101341894) PubChem (101341895) PubChem (9851662) PubChem (12358664) PubChem (12358665) PubChem (12358669) PubChem (155293357) PubChem (162964874) PubChem (163187351) PubChem (125183415) PubChem (125183416) PubChem (125183417) PubChem (177696491) PubChem (129888894) PubChem (137331554) PubChem (152743429) PubChem (162964869) PubChem (162964870) PubChem (162964871) PubChem (162964872) PubChem (162964873) PubChem (162964875) PubChem (162964876) PubChem (163186889) PubChem (169544055) PubChem (171036315) PubChem (172817291) | |||
| 40 | AH, DE, EL, FN, HG... (Y, G, n, y, S...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 10 | Chemie (NEX) PubChem (177697037) PubChem (21158515) PubChem (52948899) PubChem (4481261) PubChem (5282217) PubChem (159749) PubChem (5320120) PubChem (5281247) PubChem (101866355) PubChem (6384259) PubChem (101052392) PubChem (101866356) PubChem (101866357) PubChem (102060371) PubChem (10908146) PubChem (12358959) PubChem (162910894) PubChem (162910891) PubChem (162910895) PubChem (139033583) PubChem (162910892) PubChem (162910893) PubChem (162910896) PubChem (169502056) PubChem (172012198) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 50 |
| Total formula weight | 1019822.9 | |
| Non-Polymers* | Number of molecules | 322 |
| Total formula weight | 257072.2 | |
| All* | Total formula weight | 1276895.1 |
