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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

3JCS

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1126S alpha ribosomal RNApolymer1782576874.11Leishmania donovani
2226S delta ribosomal RNApolymer1527492600.61Leishmania donovani
3326S gamma ribosomal RNApolymer21368191.11Leishmania donovani
4426S delta ribosomal RNApolymer18359130.11Leishmania donovani
5526S epsilon ribosomal RNApolymer13342869.41Leishmania donovani
6626S zeta ribosomal RNApolymer7624254.51Leishmania donovani
775.8S ribosomal RNApolymer17154961.51Leishmania donovani
885S ribosomal RNApolymer12138840.01Leishmania donovani
9Aribosomal protein L2polymer26028331.91Leishmania donovani
10Bribosomal protein L3polymer41947672.81Leishmania donovani
11Cribosomal protein L4polymer37341228.01UniProt (E9BKR3)
Pfam (PF00573)
Pfam (PF14374)
UniProt (by SIFTS) (A0A3S5H7L0)
In PDB		Leishmania donovani
12Dribosomal protein L5polymer18821710.51UniProt (E9BFL1)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (A0A3S5H5A8)
In PDB		Leishmania donovani
13Eribosomal protein L6polymer19021567.31UniProt (E9BFB5)
Pfam (PF00347)
UniProt (by SIFTS) (A0A3S7WWL2)
In PDB		Leishmania donovani
14Fribosomal protein L6epolymer19521208.91Leishmania donovani
15Gribosomal protein L8epolymer34839175.21UniProt (E9B949)
Pfam (PF01248)
In PDB		Leishmania donovani
16Hribosomal protein L13polymer22225477.21Leishmania donovani
17Iribosomal protein L13epolymer22024803.01Leishmania donovani
18Jribosomal protein L14polymer13914982.61UniProt (E9BSQ4)
Pfam (PF00238)
UniProt (by SIFTS) (A0A3Q8IIA7)
In PDB		Leishmania donovani
19Kribosomal protein L14epolymer23326054.81UniProt (E9BG02)
Pfam (PF01929)
Pfam (PF00467)
In PDB		Leishmania donovani
20Lribosomal protein L15polymer14516165.91UniProt (E9BSQ2)
Pfam (PF00828)
UniProt (by SIFTS) (A0A3Q8IGI9)
In PDB		Leishmania donovani
21Mribosomal protein L15epolymer20424498.01UniProt (E9BMB4)
Pfam (PF00827)
In PDB		Leishmania donovani
22Nribosomal protein L16polymer21324607.21UniProt (E9B840)
Pfam (PF00252)
UniProt (by SIFTS) (A0A3S5H5C4)
In PDB		Leishmania donovani
23Oribosomal protein L18polymer30534100.61UniProt (E9BS61)
Pfam (PF17144)
Pfam (PF14204)
UniProt (by SIFTS) (A0A3Q8IJC5)
In PDB		Leishmania donovani
24Pribosomal protein L18epolymer19822071.11UniProt (E9BUI1)
Pfam (PF17135)
UniProt (by SIFTS) (A0A3S7XBN1)
In PDB		Leishmania donovani
25Qribosomal protein L19epolymer24528142.21UniProt (E9B8Q2)
Pfam (PF01280)
In PDB		Leishmania donovani
26Rribosomal protein L20epolymer17920834.41UniProt (E9BRT7)
Pfam (PF01775)
UniProt (by SIFTS) (A0A3Q8II03)
In PDB		Leishmania donovani
27Sribosomal protein L21epolymer15918059.31UniProt (E9BRE2)
Pfam (PF01157)
UniProt (by SIFTS) (A0A3Q8ICH0)
In PDB		Leishmania donovani
28Tribosomal protein L22polymer16619154.61UniProt (E9BGL6)
Pfam (PF00237)
UniProt (by SIFTS) (A0A3S7WY02)
In PDB		Leishmania donovani
29Uribosomal protein L22epolymer12915030.51UniProt (E9BU52)
Pfam (PF01776)
UniProt (by SIFTS) (A0A3Q8IJA8)
In PDB		Leishmania donovani
30Vribosomal protein L23polymer14516389.51UniProt (E9B8R9)
Pfam (PF00276)
In PDB		Leishmania donovani
31Wribosomal protein L24polymer14316217.11Leishmania donovani
32Xribosomal protein L24epolymer12414622.21Leishmania donovani
33Yribosomal protein L27epolymer13415455.31UniProt (E9BP34)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Leishmania donovani
34Zribosomal protein L28epolymer14716409.01UniProt (E9BAU9)
Pfam (PF01778)
UniProt (by SIFTS) (A0A3Q8I959)
In PDB		Leishmania donovani
35aribosomal protein L29polymer12715232.21UniProt (E9BIP6)
Pfam (PF00831)
In PDB		Leishmania donovani
36bribosomal protein L29epolymer708033.41UniProt (E9BU64)
Pfam (PF01779)
In PDB		Leishmania donovani
37cribosomal protein L30polymer25228929.01UniProt (E9BI29)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Leishmania donovani
38dribosomal protein L30epolymer10411400.31UniProt (E9BRQ6)
Pfam (PF01248)
UniProt (by SIFTS) (A0A3Q8IET6)
In PDB		Leishmania donovani
39eribosomal protein L31epolymer18320886.71UniProt (E9BSK4)
Pfam (PF01198)
In PDB		Leishmania donovani
40fribosomal protein L32epolymer13315403.11UniProt (E9BFJ5)
Pfam (PF01655)
UniProt (by SIFTS) (A0A3Q8IBA2)
In PDB		Leishmania donovani
41gribosomal protein L33epolymer14416492.31UniProt (E9BR22)
Pfam (PF01247)
UniProt (by SIFTS) (A0A3Q8II82)
In PDB		Leishmania donovani
42hribosomal protein L34epolymer16819307.11UniProt (E9BUA1)
Pfam (PF01199)
UniProt (by SIFTS) (A0A3Q8IHK2)
In PDB		Leishmania donovani
43iribosomal protein L36epolymer10512005.21UniProt (E9BF65)
Pfam (PF01158)
UniProt (by SIFTS) (A0A3Q8IDW6)
In PDB		Leishmania donovani
44jribosomal protein L37epolymer839862.61UniProt (E9BQD7)
Pfam (PF01907)
UniProt (by SIFTS) (P62885)
In PDB		Leishmania donovani
45kribosomal protein L38epolymer839479.31UniProt (E9B7P2)
Pfam (PF01781)
In PDB		Leishmania donovani
46lribosomal protein L39epolymer516504.81UniProt (E9BCX6)
Pfam (PF00832)
In PDB		Leishmania donovani
47mribosomal protein L43epolymer9210337.21UniProt (E9BFK4)
Pfam (PF01780)
In PDB		Leishmania donovani
48nribosomal protein L44epolymer10612302.71UniProt (E9BBL5)
Pfam (PF00935)
In PDB		Leishmania donovani
491, 2, 5, j, 7...MAGNESIUM IONnon-polymer24.3109Chemie (MG)
50waterwater18.0144Chemie (HOH)
Sequence modifications
R: 1 - 179 (UniProt: E9BRT7)
PDBExternal DatabaseDetails
Ile 158Leu 158VARIANT
c: 1 - 252 (UniProt: E9BI29)
PDBExternal DatabaseDetails
Ala 49Gly 49VARIANT
f: 1 - 133 (UniProt: E9BFJ5)
PDBExternal DatabaseDetails
Lys 105Thr 105VARIANT
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains48
Total formula weight2167866.1
Non-Polymers*Number of molecules109
Total formula weight2649.2
All*Total formula weight2170515.3
*Water molecules are not included.

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PDB entries from 2024-04-24

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