3JBN
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 18S ribosomal RNA | polymer | 1608 | 517983.4 | 1 | Plasmodium falciparum 3D7 | ||
| 2 | B (7) | P-tRNA | polymer | 76 | 24496.6 | 1 | Escherichia coli | ||
| 3 | C (D) | 40S ribosomal protein uS3 | polymer | 209 | 23420.5 | 1 | UniProt (Q8IKH8) Pfam (PF07650) Pfam (PF00189) | Plasmodium falciparum 3D7 | |
| 4 | D (E) | 40S ribosomal protein uS4 | polymer | 185 | 21711.6 | 1 | UniProt (Q8I3R0) Pfam (PF00163) Pfam (PF01479) | Plasmodium falciparum 3D7 | |
| 5 | E (G) | 40S ribosomal protein uS5 | polymer | 224 | 24995.2 | 1 | UniProt (Q8IL02) Pfam (PF00333) Pfam (PF03719) | Plasmodium falciparum 3D7 | |
| 6 | F (I) | 40S ribosomal protein uS7 | polymer | 189 | 21263.8 | 1 | UniProt (Q8IBN5) Pfam (PF00177) | Plasmodium falciparum 3D7 | |
| 7 | G (K) | 40S ribosomal protein uS8 | polymer | 129 | 14769.5 | 1 | UniProt (O77395) Pfam (PF00410) | Plasmodium falciparum 3D7 | |
| 8 | H (M) | 40S ribosomal protein uS9 | polymer | 138 | 15599.3 | 1 | UniProt (Q8IAX5) Pfam (PF00380) | Plasmodium falciparum 3D7 | |
| 9 | I (W) | 40S ribosomal protein eS17 | polymer | 108 | 12665.0 | 1 | UniProt (Q8I502) Pfam (PF00833) | Plasmodium falciparum 3D7 | |
| 10 | J (R) | 40S ribosomal protein eS12 | polymer | 114 | 12505.4 | 1 | UniProt (O97249) Pfam (PF01248) | Plasmodium falciparum 3D7 | |
| 11 | K (O) | 40S ribosomal protein eS10 | polymer | 79 | 9714.3 | 1 | UniProt (Q8IBQ5) Pfam (PF03501) | Plasmodium falciparum 3D7 | |
| 12 | L (Y) | 40S ribosomal protein eS19 | polymer | 154 | 17935.9 | 1 | UniProt (Q8IFP2) Pfam (PF01090) | Plasmodium falciparum 3D7 | |
| 13 | M (Z) | 40S ribosomal protein eS21 | polymer | 72 | 7966.1 | 1 | UniProt (Q8IHS5) Pfam (PF01249) | Plasmodium falciparum 3D7 | |
| 14 | N (1) | 40S ribosomal protein eS24 | polymer | 120 | 14008.7 | 1 | UniProt (Q8I3R6) Pfam (PF01282) | Plasmodium falciparum 3D7 | |
| 15 | O (2) | 40S ribosomal protein eS25 | polymer | 68 | 7645.1 | 1 | UniProt (Q8ILN8) Pfam (PF03297) | Plasmodium falciparum 3D7 | |
| 16 | P (3) | 40S ribosomal protein eS26 | polymer | 95 | 11201.1 | 1 | UniProt (O96258) Pfam (PF01283) | Plasmodium falciparum 3D7 | |
| 17 | Q (4) | 40S ribosomal protein eS27 | polymer | 76 | 8469.0 | 1 | UniProt (Q8IEN2) Pfam (PF01667) | Plasmodium falciparum 3D7 | |
| 18 | R (5) | 40S ribosomal protein eS28 | polymer | 65 | 7220.4 | 1 | UniProt (Q8IKL9) Pfam (PF01200) | Plasmodium falciparum 3D7 | |
| 19 | S (6) | 40S ribosomal protein eS30 | polymer | 43 | 4925.8 | 1 | UniProt (O96269) Pfam (PF04758) | Plasmodium falciparum 3D7 | |
| 20 | T (B) | 40S ribosomal protein eS1 | polymer | 210 | 24524.2 | 1 | UniProt (O97313) Pfam (PF01015) | Plasmodium falciparum 3D7 | |
| 21 | U (F) | 40S ribosomal protein eS4 | polymer | 257 | 29357.8 | 1 | UniProt (Q8IIU8) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Plasmodium falciparum 3D7 | |
| 22 | V (H) | 40S ribosomal protein eS6 | polymer | 214 | 24612.3 | 1 | UniProt (Q8IDR9) Pfam (PF01092) | Plasmodium falciparum 3D7 | |
| 23 | W (J) | 40S ribosomal protein eS7 | polymer | 188 | 21805.0 | 1 | UniProt (Q8IET7) Pfam (PF01251) | Plasmodium falciparum 3D7 | |
| 24 | X (L) | 40S ribosomal protein eS8 | polymer | 214 | 24717.5 | 1 | UniProt (Q8IM10) Pfam (PF01201) | Plasmodium falciparum 3D7 | |
| 25 | Y (N) | 40S ribosomal protein uS10 | polymer | 98 | 11066.9 | 1 | UniProt (Q8IK02) Pfam (PF00338) | Plasmodium falciparum 3D7 | |
| 26 | Z (P) | 40S ribosomal protein uS11 | polymer | 127 | 13610.7 | 1 | UniProt (Q8I3U6) | Plasmodium falciparum 3D7 | |
| 27 | AA (Q) | 40S ribosomal protein uS12 | polymer | 144 | 16035.8 | 1 | UniProt (O97248) Pfam (PF00164) | Plasmodium falciparum 3D7 | |
| 28 | BA (S) | 40S ribosomal protein uS13 | polymer | 128 | 14920.5 | 1 | UniProt (Q8IIA2) Pfam (PF00416) | Plasmodium falciparum 3D7 | |
| 29 | CA (T) | 40S ribosomal protein uS14 | polymer | 48 | 5798.9 | 1 | UniProt (C0H4K8) Pfam (PF00253) | Plasmodium falciparum 3D7 | |
| 30 | DA (U) | 40S ribosomal protein uS15 | polymer | 149 | 17098.2 | 1 | UniProt (Q8IDB0) Pfam (PF08069) Pfam (PF00312) | Plasmodium falciparum 3D7 | |
| 31 | EA (V) | 40S ribosomal protein uS17 | polymer | 156 | 18283.5 | 1 | UniProt (O77381) Pfam (PF16205) Pfam (PF00366) | Plasmodium falciparum 3D7 | |
| 32 | FA (X) | 40S ribosomal protein uS19 | polymer | 103 | 11924.1 | 1 | UniProt (C0H5C2) Pfam (PF00203) | Plasmodium falciparum 3D7 | |
| 33 | GA (C) | 40S ribosomal protein uS2 | polymer | 195 | 21925.7 | 1 | UniProt (Q8IJD4) Pfam (PF00318) | Plasmodium falciparum 3D7 | |
| 34 | HA (AA) | 28S ribosomal RNA | polymer | 3193 | 1027642.3 | 1 | Plasmodium falciparum 3D7 | ||
| 35 | IA (AC) | 5.8S ribosomal RNA | polymer | 151 | 48657.0 | 1 | Plasmodium falciparum 3D7 | ||
| 36 | JA (AB) | 5S ribosomal RNA | polymer | 118 | 38104.7 | 1 | Plasmodium falciparum 3D7 | ||
| 37 | KA (AL) | 60S ribosomal protein eL13 | polymer | 211 | 24964.6 | 1 | UniProt (Q8IAX6) Pfam (PF01294) | Plasmodium falciparum 3D7 | |
| 38 | LA (A1) | 60S ribosomal protein eL27 | polymer | 145 | 16654.0 | 1 | UniProt (Q8IKM5) Pfam (PF01777) | Plasmodium falciparum 3D7 | |
| 39 | MA (A2) | 60S ribosomal protein eL28 | polymer | 118 | 13377.6 | 1 | UniProt (Q8IHU0) Pfam (PF01778) | Plasmodium falciparum 3D7 | |
| 40 | NA (A4) | 60S ribosomal protein eL29 | polymer | 66 | 7910.4 | 1 | UniProt (C6S3J6) Pfam (PF01779) | Plasmodium falciparum 3D7 | |
| 41 | OA (A6) | 60S ribosomal protein eL30 | polymer | 98 | 10644.4 | 1 | UniProt (Q8IJK8) Pfam (PF01248) | Plasmodium falciparum 3D7 | |
| 42 | PA (A7) | 60S ribosomal protein eL31 | polymer | 102 | 12051.4 | 1 | UniProt (Q8I463) Pfam (PF01198) | Plasmodium falciparum 3D7 | |
| 43 | QA (AN) | 60S ribosomal protein eL14 | polymer | 146 | 17139.6 | 1 | UniProt (Q8ILE8) Pfam (PF01929) | Plasmodium falciparum 3D7 | |
| 44 | RA (A8) | 60S ribosomal protein eL32 | polymer | 125 | 14817.9 | 1 | UniProt (Q8I3B0) Pfam (PF01655) | Plasmodium falciparum 3D7 | |
| 45 | SA (A9) | 60S ribosomal protein eL33 | polymer | 103 | 11982.1 | 1 | UniProt (Q8IHT9) Pfam (PF01247) | Plasmodium falciparum 3D7 | |
| 46 | TA (Aa) | 60S ribosomal protein eL34 | polymer | 106 | 12291.6 | 1 | UniProt (Q8IBY4) Pfam (PF01199) | Plasmodium falciparum 3D7 | |
| 47 | UA (Ab) | 60S ribosomal protein eL36 | polymer | 105 | 12026.5 | 1 | UniProt (Q8I713) Pfam (PF01158) | Plasmodium falciparum 3D7 | |
| 48 | VA (Ad) | 60S ribosomal protein eL38 | polymer | 76 | 9080.1 | 1 | UniProt (Q8II62) Pfam (PF01781) | Plasmodium falciparum 3D7 | |
| 49 | WA (Ae) | 60S ribosomal protein eL39 | polymer | 50 | 6409.7 | 1 | UniProt (C0H4H3) Pfam (PF00832) | Plasmodium falciparum 3D7 | |
| 50 | XA (Af) | 60S ribosomal protein eL40 | polymer | 51 | 5971.2 | 1 | UniProt (Q8ID50) Pfam (PF01020) | Plasmodium falciparum 3D7 | |
| 51 | YA (AP) | 60S ribosomal protein eL15 | polymer | 204 | 24066.5 | 1 | UniProt (C0H4A6) Pfam (PF00827) | Plasmodium falciparum 3D7 | |
| 52 | ZA (Ah) | 60S ribosomal protein eL43 | polymer | 85 | 9477.5 | 1 | UniProt (O96184) Pfam (PF01780) | Plasmodium falciparum 3D7 | |
| 53 | AB (Ai) | 60S ribosomal protein eL44 | polymer | 95 | 11228.7 | 1 | UniProt (O97231) Pfam (PF00935) | Plasmodium falciparum 3D7 | |
| 54 | BB (AI) | 60S ribosomal protein eL6 | polymer | 213 | 24696.7 | 1 | UniProt (Q8IDV1) | Plasmodium falciparum 3D7 | |
| 55 | CB (AJ) | 60S ribosomal protein eL8 | polymer | 244 | 28384.1 | 1 | UniProt (Q8ILL2) Pfam (PF01248) | Plasmodium falciparum 3D7 | |
| 56 | DB (Ac) | 60S ribosomal protein eL37 | polymer | 89 | 10155.1 | 1 | UniProt (C0H4L5) Pfam (PF01907) | Plasmodium falciparum 3D7 | |
| 57 | EB (AK) | 60S ribosomal protein uL13 | polymer | 201 | 23642.2 | 1 | UniProt (Q8IJZ7) Pfam (PF00572) | Plasmodium falciparum 3D7 | |
| 58 | FB (AM) | 60S ribosomal protein uL14 | polymer | 132 | 14255.8 | 1 | UniProt (Q8IE09) Pfam (PF00238) | Plasmodium falciparum 3D7 | |
| 59 | GB (AS) | 60S ribosomal protein eL18 | polymer | 186 | 21377.6 | 1 | UniProt (C0H5G3) Pfam (PF17135) | Plasmodium falciparum 3D7 | |
| 60 | HB (AO) | 60S ribosomal protein uL15 | polymer | 147 | 16634.6 | 1 | UniProt (C6KT23) Pfam (PF00828) | Plasmodium falciparum 3D7 | |
| 61 | IB (AQ) | 60S ribosomal protein uL16 | polymer | 205 | 23612.6 | 1 | UniProt (Q8ILV2) Pfam (PF00252) | Plasmodium falciparum 3D7 | |
| 62 | JB (AR) | 60S ribosomal protein uL18 | polymer | 289 | 33473.6 | 1 | UniProt (Q8ILL3) Pfam (PF17144) Pfam (PF14204) | Plasmodium falciparum 3D7 | |
| 63 | KB (AW) | 60S ribosomal protein uL22 | polymer | 170 | 19071.5 | 1 | UniProt (Q8IDI5) Pfam (PF00237) | Plasmodium falciparum 3D7 | |
| 64 | LB (AY) | 60S ribosomal protein uL23 | polymer | 101 | 11431.5 | 1 | UniProt (Q8IE82) Pfam (PF00276) | Plasmodium falciparum 3D7 | |
| 65 | MB (AT) | 60S ribosomal protein eL19 | polymer | 181 | 21509.9 | 1 | UniProt (C6KSY6) Pfam (PF01280) | Plasmodium falciparum 3D7 | |
| 66 | NB (AZ) | 60S ribosomal protein uL24 | polymer | 121 | 14281.0 | 1 | UniProt (O77364) Pfam (PF16906) Pfam (PF00467) | Plasmodium falciparum 3D7 | |
| 67 | OB (A3) | 60S ribosomal protein uL29 | polymer | 119 | 14173.1 | 1 | UniProt (Q8IIB4) Pfam (PF00831) | Plasmodium falciparum 3D7 | |
| 68 | PB (A5) | 60S ribosomal protein uL30 | polymer | 223 | 26650.7 | 1 | UniProt (O97250) Pfam (PF08079) Pfam (PF00327) | Plasmodium falciparum 3D7 | |
| 69 | QB (AD) | 60S ribosomal protein uL2 | polymer | 247 | 26630.3 | 1 | UniProt (Q8I3T9) Pfam (PF00181) Pfam (PF03947) | Plasmodium falciparum 3D7 | |
| 70 | RB (AE) | 60S ribosomal protein uL3 | polymer | 380 | 43629.3 | 1 | UniProt (Q8IJC6) Pfam (PF00297) | Plasmodium falciparum 3D7 | |
| 71 | SB (AF) | 60S ribosomal protein uL4 | polymer | 390 | 44081.1 | 1 | UniProt (Q8I431) Pfam (PF00573) Pfam (PF14374) | Plasmodium falciparum 3D7 | |
| 72 | TB (AG) | 60S ribosomal protein uL5 | polymer | 159 | 18605.8 | 1 | UniProt (Q8IBQ6) Pfam (PF00281) Pfam (PF00673) | Plasmodium falciparum 3D7 | |
| 73 | UB (AU) | 60S ribosomal protein eL20 | polymer | 180 | 21304.9 | 1 | UniProt (Q8IDS6) Pfam (PF01775) | Plasmodium falciparum 3D7 | |
| 74 | VB (AH) | 60S ribosomal protein uL6 | polymer | 185 | 21004.9 | 1 | UniProt (Q8IE85) Pfam (PF00347) | Plasmodium falciparum 3D7 | |
| 75 | WB (AV) | 60S ribosomal protein eL21 | polymer | 155 | 18173.5 | 1 | UniProt (Q8ILK3) Pfam (PF01157) | Plasmodium falciparum 3D7 | |
| 76 | XB (Ag) | 60S ribosomal protein eL41 | polymer | 37 | 4906.0 | 1 | UniProt (C6S3G4) Pfam (PF05162) | Plasmodium falciparum 3D7 | |
| 77 | YB (AX) | 60S ribosomal protein eL22 | polymer | 97 | 11680.9 | 1 | UniProt (Q8IB51) Pfam (PF01776) | Plasmodium falciparum 3D7 | |
| 78 | ZB (A0) | 60S ribosomal protein eL24 | polymer | 62 | 7383.6 | 1 | UniProt (Q8IEM3) Pfam (PF01246) | Plasmodium falciparum 3D7 |
Sequence modifications
H: 1 - 213 (UniProt: Q8IDR9)
AL: 2 - 212 (UniProt: Q8IAX6)
AN: 5 - 150 (UniProt: Q8ILE8)
AK: 1 - 201 (UniProt: Q8IJZ7)
AR: 5 - 293 (UniProt: Q8ILL3)
AW: 4 - 154 (UniProt: Q8IDI5)
AW: 4 - 215 (PDB: 3JBN)
| PDB | External Database | Details |
|---|---|---|
| Ile 158 | - | insertion |
| Asp 195 | Glu 195 | conflict |
| PDB | External Database | Details |
|---|---|---|
| His 19 | Arg 19 | conflict |
| Arg 20 | His 20 | conflict |
| Cys 201 | Arg 201 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | Lys 11 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Ala 109 | Tyr 109 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | Lys 292 | deletion |
AW: 4 - 215 (PDB: 3JBN)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 78 |
| Total formula weight | 2889425.6 | |
| All* | Total formula weight | 2889425.6 |
