3J9M
Structure of the human mitochondrial ribosome (class 1)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | 16S rRNA | polymer | 1559 | 500019.6 | 1 | Homo sapiens (human) | ||
| 2 | B | mt-tRNAVal | polymer | 73 | 23266.9 | 1 | Homo sapiens (human) | ||
| 3 | D | uL2m | polymer | 305 | 33355.9 | 1 | UniProt (Q5T653) Pfam (PF00181) Pfam (PF03947) In PDB | Homo sapiens (human) | |
| 4 | E | uL3m | polymer | 348 | 38689.6 | 1 | UniProt (P09001) Pfam (PF00297) In PDB | Homo sapiens (human) | |
| 5 | F | uL4m | polymer | 311 | 34970.2 | 1 | UniProt (Q9BYD3) Pfam (PF00573) In PDB | Homo sapiens (human) | |
| 6 | H | bL9m | polymer | 267 | 30296.4 | 1 | UniProt (Q9BYD2) Pfam (PF01281) In PDB | Homo sapiens (human) | |
| 7 | I | uL10m | polymer | 261 | 29322.5 | 1 | UniProt (Q7Z7H8) Pfam (PF00466) In PDB | Homo sapiens (human) | |
| 8 | J | uL11m | polymer | 192 | 20716.2 | 1 | UniProt (Q9Y3B7) Pfam (PF03946) Pfam (PF00298) In PDB | Homo sapiens (human) | |
| 9 | K | uL13m | polymer | 178 | 20723.0 | 1 | UniProt (Q9BYD1) Pfam (PF00572) In PDB | Homo sapiens (human) | |
| 10 | L | uL14m | polymer | 145 | 15973.7 | 1 | UniProt (Q6P1L8) Pfam (PF00238) In PDB | Homo sapiens (human) | |
| 11 | M | uL15m | polymer | 296 | 33473.8 | 1 | UniProt (Q9P015) Pfam (PF00828) In PDB | Homo sapiens (human) | |
| 12 | N | uL16m | polymer | 251 | 28496.3 | 1 | UniProt (Q9NX20) Pfam (PF00252) In PDB | Homo sapiens (human) | |
| 13 | O | bL17m | polymer | 175 | 20083.3 | 1 | UniProt (Q9NRX2) Pfam (PF01196) In PDB | Homo sapiens (human) | |
| 14 | P | uL18m | polymer | 179 | 20465.3 | 1 | UniProt (A8K9D2) Pfam (PF00861) In PDB | Homo sapiens (human) | |
| 15 | Q | bL19m | polymer | 292 | 33585.0 | 1 | UniProt (P49406) Pfam (PF01245) In PDB | Homo sapiens (human) | |
| 16 | R | bL20m | polymer | 149 | 17479.7 | 1 | UniProt (Q9BYC9) Pfam (PF00453) In PDB | Homo sapiens (human) | |
| 17 | S | bL21m | polymer | 205 | 22847.7 | 1 | UniProt (Q7Z2W9) Pfam (PF00829) In PDB | Homo sapiens (human) | |
| 18 | T | uL22m | polymer | 212 | 24369.5 | 1 | UniProt (E7ESL0) Pfam (PF00237) In PDB | Homo sapiens (human) | |
| 19 | U | uL23m | polymer | 153 | 17807.2 | 1 | UniProt (Q16540) Pfam (PF00276) In PDB | Homo sapiens (human) | |
| 20 | V | uL24m | polymer | 216 | 24953.9 | 1 | UniProt (Q96A35) Pfam (PF00467) Pfam (PF17136) In PDB | Homo sapiens (human) | |
| 21 | W | bL27m | polymer | 148 | 16102.9 | 1 | UniProt (Q9P0M9) Pfam (PF01016) In PDB | Homo sapiens (human) | |
| 22 | X | bL28m | polymer | 256 | 30090.7 | 1 | UniProt (Q4TT38) In PDB | Homo sapiens (human) | |
| 23 | Y | uL29m | polymer | 250 | 29508.5 | 1 | UniProt (Q9HD33) Pfam (PF06984) In PDB | Homo sapiens (human) | |
| 24 | Z | uL30m | polymer | 161 | 18582.8 | 1 | UniProt (Q8TCC3) Pfam (PF00327) In PDB | Homo sapiens (human) | |
| 25 | 0 | bL32m | polymer | 188 | 21437.8 | 1 | UniProt (Q9BYC8) Pfam (PF01783) In PDB | Homo sapiens (human) | |
| 26 | 1 | bL33m | polymer | 65 | 7635.2 | 1 | UniProt (O75394) Pfam (PF00471) In PDB | Homo sapiens (human) | |
| 27 | 2 | bL34m | polymer | 92 | 10183.9 | 1 | UniProt (Q9BQ48) Pfam (PF00468) In PDB | Homo sapiens (human) | |
| 28 | 3 | bL35m | polymer | 188 | 21558.5 | 1 | UniProt (Q9NZE8) Pfam (PF01632) In PDB | Homo sapiens (human) | |
| 29 | 4 | bL36m | polymer | 103 | 11809.3 | 1 | UniProt (Q9P0J6) Pfam (PF00444) In PDB | Homo sapiens (human) | |
| 30 | 5 | mL37 | polymer | 423 | 48183.3 | 1 | UniProt (Q9BZE1) Pfam (PF07147) In PDB | Homo sapiens (human) | |
| 31 | 6 | mL38 | polymer | 380 | 44659.4 | 1 | UniProt (Q96DV4) Pfam (PF01161) In PDB | Homo sapiens (human) | |
| 32 | 7 | mL39 | polymer | 338 | 38764.8 | 1 | UniProt (Q9NYK5) In PDB | Homo sapiens (human) | |
| 33 | 8 | mL40 | polymer | 206 | 24534.4 | 1 | UniProt (Q9NQ50) Pfam (PF09812) In PDB | Homo sapiens (human) | |
| 34 | 9 | mL41 | polymer | 137 | 15404.7 | 1 | UniProt (Q8IXM3) Pfam (PF09809) In PDB | Homo sapiens (human) | |
| 35 | a | mL42 | polymer | 142 | 16691.2 | 1 | UniProt (Q9Y6G3) Pfam (PF10210) In PDB | Homo sapiens (human) | |
| 36 | b | mL43 | polymer | 155 | 17452.8 | 1 | UniProt (Q8N983) Pfam (PF05047) In PDB | Homo sapiens (human) | |
| 37 | c | mL44 | polymer | 332 | 37583.3 | 1 | UniProt (Q9H9J2) In PDB | Homo sapiens (human) | |
| 38 | d | mL45 | polymer | 306 | 35402.9 | 1 | UniProt (Q9BRJ2) Pfam (PF04280) In PDB | Homo sapiens (human) | |
| 39 | e | mL46 | polymer | 279 | 31748.1 | 1 | UniProt (Q9H2W6) Pfam (PF11788) In PDB | Homo sapiens (human) | |
| 40 | f | mL48 | polymer | 194 | 21856.2 | 1 | UniProt (Q96GC5) Pfam (PF00338) In PDB | Homo sapiens (human) | |
| 41 | g | mL49 | polymer | 166 | 19225.0 | 1 | UniProt (Q13405) Pfam (PF05046) In PDB | Homo sapiens (human) | |
| 42 | h | mL50 | polymer | 158 | 18349.9 | 1 | UniProt (Q8N5N7) Pfam (PF10501) In PDB | Homo sapiens (human) | |
| 43 | i | mL51 | polymer | 128 | 15125.9 | 1 | UniProt (Q4U2R6) Pfam (PF10244) In PDB | Homo sapiens (human) | |
| 44 | j | mL52 | polymer | 123 | 13696.7 | 1 | UniProt (A8K7J6) Pfam (PF18699) In PDB | Homo sapiens (human) | |
| 45 | k | mL53 | polymer | 112 | 12125.9 | 1 | UniProt (Q96EL3) Pfam (PF10780) In PDB | Homo sapiens (human) | |
| 46 | l | mL54 | polymer | 138 | 15844.2 | 1 | UniProt (Q6P161) Pfam (PF08561) In PDB | Homo sapiens (human) | |
| 47 | m | bL31m | polymer | 128 | 15160.4 | 1 | UniProt (Q7Z7F7) Pfam (PF09776) In PDB | Homo sapiens (human) | |
| 48 | o | mL63 | polymer | 102 | 12292.3 | 1 | UniProt (Q9BQC6) Pfam (PF14978) In PDB | Homo sapiens (human) | |
| 49 | p | mL62 (ICT1) | polymer | 206 | 23674.2 | 1 | UniProt (Q14197) Pfam (PF00472) In PDB | Homo sapiens (human) | |
| 50 | q | mL64 (CRIF1) | polymer | 222 | 25426.9 | 1 | UniProt (Q8TAE8) Pfam (PF10147) In PDB | Homo sapiens (human) | |
| 51 | r | mL66 (bS18a) | polymer | 196 | 22224.1 | 1 | UniProt (Q9NVS2) Pfam (PF01084) In PDB | Homo sapiens (human) | |
| 52 | s | mL65 (mS30) | polymer | 439 | 50429.6 | 1 | UniProt (Q9NP92) Pfam (PF07147) In PDB | Homo sapiens (human) | |
| 53 | t | Unknown protein/protein extension | polymer | 28 | 2401.0 | 1 | Homo sapiens (human) | ||
| 54 | u | E-site tRNA | polymer | 2 | 589.4 | 1 | Homo sapiens (human) | ||
| 55 | AA | 12S rRNA | polymer | 954 | 306112.1 | 1 | Homo sapiens (human) | ||
| 56 | AB | uS2m | polymer | 296 | 33298.2 | 1 | UniProt (Q9Y399) Pfam (PF00318) In PDB | Homo sapiens (human) | |
| 57 | AC | uS3m | polymer | 167 | 19046.2 | 1 | UniProt (Q96EL2) Pfam (PF14955) In PDB | Homo sapiens (human) | |
| 58 | AD | uS5m | polymer | 430 | 48094.6 | 1 | UniProt (P82675) Pfam (PF21251) Pfam (PF00333) Pfam (PF03719) In PDB | Homo sapiens (human) | |
| 59 | AE | bS6m | polymer | 125 | 14250.6 | 1 | UniProt (P82932) Pfam (PF01250) In PDB | Homo sapiens (human) | |
| 60 | AF | uS7m | polymer | 242 | 28186.2 | 1 | UniProt (Q9Y2R9) Pfam (PF00177) In PDB | Homo sapiens (human) | |
| 61 | AG | uS9m | polymer | 396 | 45909.9 | 1 | UniProt (P82933) Pfam (PF00380) In PDB | Homo sapiens (human) | |
| 62 | AH | uS10m | polymer | 201 | 23033.5 | 1 | UniProt (P82664) Pfam (PF00338) In PDB | Homo sapiens (human) | |
| 63 | AI | uS11m | polymer | 194 | 20648.8 | 1 | UniProt (P82912) Pfam (PF00411) In PDB | Homo sapiens (human) | |
| 64 | AJ | uS12m | polymer | 138 | 15200.9 | 1 | UniProt (O15235) Pfam (PF00164) In PDB | Homo sapiens (human) | |
| 65 | AK | uS14m | polymer | 128 | 15168.8 | 1 | UniProt (O60783) Pfam (PF00253) In PDB | Homo sapiens (human) | |
| 66 | AL | uS15m | polymer | 257 | 29903.3 | 1 | UniProt (P82914) Pfam (PF00312) In PDB | Homo sapiens (human) | |
| 67 | AM | bS16m | polymer | 137 | 15371.9 | 1 | UniProt (Q9Y3D3) Pfam (PF00886) In PDB | Homo sapiens (human) | |
| 68 | AN | uS17m | polymer | 130 | 14526.1 | 1 | UniProt (Q9Y2R5) Pfam (PF00366) In PDB | Homo sapiens (human) | |
| 69 | AO | mS40 (bS18b) | polymer | 258 | 29440.6 | 1 | UniProt (Q9Y676) Pfam (PF01084) In PDB | Homo sapiens (human) | |
| 70 | AP | bS18m (bS18c) | polymer | 142 | 15876.8 | 1 | UniProt (Q9Y3D5) Pfam (PF01084) In PDB | Homo sapiens (human) | |
| 71 | AQ | bS21m | polymer | 87 | 10764.7 | 1 | UniProt (P82921) Pfam (PF01165) In PDB | Homo sapiens (human) | |
| 72 | AR | mS22 | polymer | 360 | 41337.3 | 1 | UniProt (P82650) Pfam (PF10245) In PDB | Homo sapiens (human) | |
| 73 | AS | mS23 | polymer | 190 | 21805.7 | 1 | UniProt (Q9Y3D9) Pfam (PF10484) In PDB | Homo sapiens (human) | |
| 74 | AT | mS25 | polymer | 173 | 20146.4 | 1 | UniProt (P82663) Pfam (PF05047) In PDB | Homo sapiens (human) | |
| 75 | AU | mS26 | polymer | 205 | 24259.8 | 1 | UniProt (Q9BYN8) Pfam (PF14943) In PDB | Homo sapiens (human) | |
| 76 | AV | mS27 | polymer | 414 | 47669.3 | 1 | UniProt (Q92552) Pfam (PF10037) In PDB | Homo sapiens (human) | |
| 77 | AW | bS1m | polymer | 187 | 20878.8 | 1 | UniProt (Q9Y2Q9) Pfam (PF10246) In PDB | Homo sapiens (human) | |
| 78 | AX | mS29 | polymer | 398 | 45634.4 | 1 | UniProt (P51398) Pfam (PF10236) In PDB | Homo sapiens (human) | |
| 79 | AY | mS31 | polymer | 395 | 45391.5 | 1 | UniProt (Q92665) Pfam (PF15433) In PDB | Homo sapiens (human) | |
| 80 | AZ | mS33 | polymer | 106 | 12657.8 | 1 | UniProt (Q9Y291) Pfam (PF08293) In PDB | Homo sapiens (human) | |
| 81 | A0 | mS34 | polymer | 218 | 25695.5 | 1 | UniProt (P82930) Pfam (PF16053) In PDB | Homo sapiens (human) | |
| 82 | A1 | mS35 | polymer | 323 | 36898.3 | 1 | UniProt (P82673) Pfam (PF10213) In PDB | Homo sapiens (human) | |
| 83 | A2 | mS37 | polymer | 118 | 13498.8 | 1 | UniProt (Q96BP2) Pfam (PF06747) In PDB | Homo sapiens (human) | |
| 84 | A3 | mS38 | polymer | 199 | 22395.3 | 1 | UniProt (Q9NWT8) Pfam (PF08213) In PDB | Homo sapiens (human) | |
| 85 | A4 | mS39 | polymer | 579 | 61294.8 | 1 | UniProt (Q96EY7) Pfam (PF13812) In PDB | Homo sapiens (human) | |
| 86 | A, M, AA, g | MAGNESIUM ION | non-polymer | 24.3 | 127 | Chemie (MG) | |||
| 87 | 0, 4, r, AB, AO... | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) | |||
| 88 | AX | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) |
Sequence modifications
A4: 1 - 143 (UniProt: Q96EY7)
A4: 368 - 380 (UniProt: Q96EY7)
A4: 414 - 689 (UniProt: Q96EY7)
A4: 1 - 689 (PDB: 3J9M)
A4: 368 - 380 (UniProt: Q96EY7)
A4: 414 - 689 (UniProt: Q96EY7)
A4: 1 - 689 (PDB: 3J9M)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 85 |
| Total formula weight | 2861048.8 | |
| Non-Polymers* | Number of molecules | 135 |
| Total formula weight | 3987.8 | |
| All* | Total formula weight | 2865036.6 |
