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3J16

Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Dom34ppolymer38644119.81UniProt (P33309)
Pfam (PF03463)
Pfam (PF03464)
Pfam (PF03465)
Saccharomyces cerevisiae
2B
(B)
Rli1ppolymer60868433.21UniProt (Q03195)
Pfam (PF04068)
Pfam (PF00037)
Pfam (PF00005)
Saccharomyces cerevisiae
3C
(J)
28S ribosomal RNApolymer23375106.51Saccharomyces cerevisiae
4D
(K)
18S ribosomal RNApolymer15549863.61Saccharomyces cerevisiae
5E
(L)
P-site tRNApolymer7524135.31Saccharomyces cerevisiae
6F
(F)
60S ribosomal protein L6polymer19121605.11UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae
7G
(E)
40S ribosomal protein S30Epolymer637137.51UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae
8H
(G)
60S ribosomal protein L10polymer31233749.11UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
Saccharomyces cerevisiae
9I
(C)
40S ribosomal protein S6Epolymer23627054.51UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae
10J
(H)
60S ribosomal protein L11polymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
Saccharomyces cerevisiae
11K
(I)
40S ribosomal protein S24Epolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae
12L
(D)
40S ribosomal protein S24-Apolymer13515362.81UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae
13M
(B)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
14N
(B)
ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.21Chemie (ATP)
15O, P
(B)
IRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
16Q
(B)
waterwater18.01Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight398912.1
Non-Polymers*Number of molecules4
Total formula weight1234.8
All*Total formula weight400146.8
*Water molecules are not included.

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PDB entries from 2025-06-11

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