3ILQ
Structure of mCD1d with bound glycolipid BbGL-2c from Borrelia burgdorferi
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C) | T-cell surface glycoprotein CD1d1 | polymer | 285 | 32609.6 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) | Mus musculus (mouse) | |
| 2 | B (D) | Beta-2 microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (Q91XJ8) Pfam (PF07654) UniProt (by SIFTS) (P01887) | Mus musculus (mouse) | |
| 3 | C (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | D, E (C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 5 | F (C) | (2S)-3-(alpha-D-galactopyranosyloxy)-2-(hexadecanoyloxy)propyl (9Z)-octadec-9-enoate | non-polymer | 757.1 | 1 | Chemie (1O2) PubChem (6475756) PubChem (11422817) PubChem (25032479) PubChem (44593354) PubChem (177669147) PubChem (46931128) PubChem (25202268) PubChem (72955714) PubChem (123177764) PubChem (70678950) PubChem (90324291) PubChem (129661863) PubChem (134740331) PubChem (156492533) PubChem (162979109) PubChem (171360955) | |||
| 6 | G, H (C, D) | water | water | 18.0 | 131 | Chemie (HOH) |
Sequence modifications
C: 1 - 279 (UniProt: P11609)
| PDB | External Database | Details |
|---|---|---|
| His 280 | - | expression tag |
| His 281 | - | expression tag |
| His 282 | - | expression tag |
| His 283 | - | expression tag |
| His 284 | - | expression tag |
| His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 44270.0 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 1199.5 | |
| All* | Total formula weight | 45893.9 |
