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3HOV

Complete RNA polymerase II elongation complex II

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ADNA-directed RNA polymerase II subunit RPB1polymer1733191821.61UniProt (P04050)
Pfam (PF04997)
Pfam (PF05001)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Pfam (PF04992)
Pfam (PF04990)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B1, RNA polymerase II subunit 1, DNA-directed RNA polymerase III largest subunit, RNA polymerase II subunit B220
2BDNA-directed RNA polymerase II subunit RPB2polymer1224138937.31UniProt (P08518)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF04566)
Pfam (PF04567)
Pfam (PF00562)
Pfam (PF04560)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit 2, DNA-directed RNA polymerase II 140 kDa polypeptide, B150
3CDNA-directed RNA polymerase II subunit RPB3polymer31835330.51UniProt (P16370)
Pfam (PF01193)
Pfam (PF01000)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B3, RNA polymerase II subunit 3, DNA-directed RNA polymerase II 45 kDa polypeptide, B44.5
4DDNA-directed RNA polymerase II subunit RPB4polymer22125451.21UniProt (P20433)
Pfam (PF03874)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B4, DNA-directed RNA polymerase II 32 kDa polypeptide, B32
5EDNA-directed RNA polymerases I, II, and III subunit RPABC1polymer21525117.11UniProt (P20434)
Pfam (PF03871)
Pfam (PF01191)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC1, DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide, ABC27
6FDNA-directed RNA polymerases I, II, and III subunit RPABC2polymer15517931.81UniProt (P20435)
Pfam (PF01192)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC2, DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide, ABC23
7GDNA-directed RNA polymerase II subunit RPB7polymer17119081.11UniProt (P34087)
Pfam (PF03876)
Pfam (PF00575)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B7, B16
8HDNA-directed RNA polymerases I, II, and III subunit RPABC3polymer14616525.41UniProt (P20436)
Pfam (PF03870)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC3, DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide, ABC14.5, ABC14.4
9IDNA-directed RNA polymerase II subunit RPB9polymer12214308.21UniProt (P27999)
Pfam (PF02150)
Pfam (PF01096)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B9, DNA-directed RNA polymerase II subunit 9, DNA-directed RNA polymerase II 14.2 kDa polypeptide, B12.6
10JDNA-directed RNA polymerases I, II, and III subunit RPABC5polymer708290.71UniProt (P22139)
Pfam (PF01194)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC5, DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide, ABC10-beta, ABC8
11KDNA-directed RNA polymerase II subunit RPB11polymer12013633.51UniProt (P38902)
Pfam (PF13656)
Pfam (PF01193)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B11, DNA-directed RNA polymerase II 13.6 kDa polypeptide, B13.6
12LDNA-directed RNA polymerases I, II, and III subunit RPABC4polymer707730.01UniProt (P40422)
Pfam (PF03604)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC4, ABC10-alpha
13T5'-D(*AP*GP*CP*TP*CP*AP*A*GP*TP*AP*GP*TP*TP*AP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3'polymer268058.01TEMPLATE DNA
14N5'-D(*T*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3'polymer133941.61NONTEMPLATE DNA
15P5'-R(*UP*GP*CP*AP*UP*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*CP*A)-3'polymer175403.31PRODUCT RNA
16A, B, C, I, J...ZINC IONnon-polymer65.48Chemie (ZN)
17AMAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains15
Total formula weight531561.1
Non-Polymers*Number of molecules9
Total formula weight547.6
All*Total formula weight532108.7
*Water molecules are not included.

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PDB entries from 2024-03-27

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