3GPA
Crystal structure of the Mimivirus NDK N62L mutant complexed with CDP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, C, E, B, D...) | Nucleoside diphosphate kinase | polymer | 142 | 16300.5 | 6 | UniProt (Q5UQL3) Pfam (PF00334) | Acanthamoeba polyphaga mimivirus | NDP kinase, NDK |
| 2 | G, J, L, N, P... (A, C, E, B, D...) | CYTIDINE-5'-DIPHOSPHATE | non-polymer | 403.2 | 6 | Chemie (CDP) | |||
| 3 | H, K, M, O, Q... (A, C, E, B, D...) | MAGNESIUM ION | non-polymer | 24.3 | 6 | Chemie (MG) | |||
| 4 | I (A) | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) | |||
| 5 | T, U, V, W, X... (A, C, E, B, D...) | water | water | 18.0 | 367 | Chemie (HOH) |
Sequence modifications
A, C, E, B, D, F: 2 - 137 (UniProt: Q5UQL3)
| PDB | External Database | Details |
|---|---|---|
| Tyr -4 | - | expression tag |
| Lys -3 | - | expression tag |
| Lys -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Leu 1 | - | expression tag |
| Leu 62 | Asn 62 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 97803.3 | |
| Non-Polymers* | Number of molecules | 13 |
| Total formula weight | 2659.9 | |
| All* | Total formula weight | 100463.2 |
