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3GP9

Crystal structure of the Mimivirus NDK complexed with GDP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D, E...Nucleoside diphosphate kinasepolymer14216301.56UniProt (Q5UQL3)
Pfam (PF00334)
In PDB
Acanthamoeba polyphaga mimivirusNDP kinase, NDK
2A, B, C, D, E...GUANOSINE-5'-DIPHOSPHATEnon-polymer443.26Chemie (GDP)
3A, B, C, D, E...PHOSPHATE IONnon-polymer95.06Chemie (PO4)
4A, B, C, D, E...MAGNESIUM IONnon-polymer24.36Chemie (MG)
5waterwater18.0678Chemie (HOH)
Sequence modifications
A, B, C, D, E, F: 2 - 137 (UniProt: Q5UQL3)
PDBExternal DatabaseDetails
Tyr -4-expression tag
Lys -3-expression tag
Lys -2-expression tag
Ala -1-expression tag
Gly 0-expression tag
Leu 1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight97809.0
Non-Polymers*Number of molecules18
Total formula weight3374.9
All*Total formula weight101183.8
*Water molecules are not included.

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PDB entries from 2024-03-27

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