3GP9
Crystal structure of the Mimivirus NDK complexed with GDP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Nucleoside diphosphate kinase | polymer | 142 | 16301.5 | 6 | UniProt (Q5UQL3) Pfam (PF00334) | Acanthamoeba polyphaga mimivirus | NDP kinase, NDK |
| 2 | G, J, M, P, S... (A, B, C, D, E...) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 6 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 3 | H, K, N, Q, T... (A, B, C, D, E...) | PHOSPHATE ION | non-polymer | 95.0 | 6 | Chemie (PO4) PubChem (1061) | |||
| 4 | I, L, O, R, U... (A, B, C, D, E...) | MAGNESIUM ION | non-polymer | 24.3 | 6 | Chemie (MG) PubChem (888) | |||
| 5 | AA, BA, CA, DA, Y... (C, D, E, F, A...) | water | water | 18.0 | 678 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 2 - 137 (UniProt: Q5UQL3)
| PDB | External Database | Details |
|---|---|---|
| Tyr -4 | - | expression tag |
| Lys -3 | - | expression tag |
| Lys -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Leu 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 97809.0 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 3374.9 | |
| All* | Total formula weight | 101183.8 |
