3GMR

Structure of mouse CD1d in complex with C8Ph, different space group

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	T-cell surface glycoprotein CD1d1	polymer	287	32776.8	1	UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB	Mus musculus (mouse)
2	B	Beta-2 microglobulin	polymer	99	11660.4	1	UniProt (Q91XJ8) Pfam (PF07654) UniProt (by SIFTS) (P01887) In PDB	Mus musculus (mouse)
3	C, D	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	2	In PDB GlyTouCan (G42666HT)
4	E	alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	branched		1057.0	1	In PDB GlyTouCan (G29616NS)
5	A	N-{(1S,2S,3R)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyheptadecyl}-8-phenyloctanamide	non-polymer		681.9	1	Chemie (C8P)
6	A	PALMITIC ACID	non-polymer		256.4	1	Chemie (PLM)
7	A	1,2-ETHANEDIOL	non-polymer		62.1	4	Chemie (EDO)
8	B	TETRAETHYLENE GLYCOL	non-polymer		194.2	1	Chemie (PG4)
9		water	water		18.0	308	Chemie (HOH)

Sequence modifications

A: 1 - 279 (UniProt: P11609)

PDB	External Database	Details
His 201	Asp 219	SEE REMARK 999
Gly 280	-	expression tag
Ser 281	-	expression tag
His 282	-	expression tag
His 283	-	expression tag
His 284	-	expression tag
His 285	-	expression tag
His 286	-	expression tag
His 287	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	44437.1
Branched	Number of molecules	3
	Total formula weight	1905.8
Non-Polymers*	Number of molecules	7
	Total formula weight	1380.9
All*	Total formula weight	47723.8

*Water molecules are not included.