3GMQ
Structure of mouse CD1d expressed in SF9 cells, no ligand added
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | T-cell surface glycoprotein CD1d1 | polymer | 287 | 32776.8 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (mouse) | |
2 | B | Beta-2 microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (Q91XJ8) Pfam (PF07654) UniProt (by SIFTS) (P01887) In PDB | Mus musculus (mouse) | |
3 | C | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G42227JK) | |||
4 | D | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB GlyTouCan (G82348BZ) | |||
5 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
6 | A | PALMITIC ACID | non-polymer | 256.4 | 1 | Chemie (PLM) | |||
7 | A, B | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
8 | water | water | 18.0 | 232 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
PDB | External Database | Details |
---|---|---|
His 201 | Asp 219 | SEE REMARK 999 |
Gly 280 | - | expression tag |
Ser 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
His 286 | - | expression tag |
His 287 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 44437.1 | |
Branched | Number of molecules | 2 |
Total formula weight | 1967.8 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 725.9 | |
All* | Total formula weight | 47130.8 |