3FBE
Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with GDP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Nucleoside diphosphate kinase | polymer | 142 | 16200.4 | 6 | UniProt (Q5UQL3) Pfam (PF00334) | Acanthamoeba polyphaga mimivirus | NDP kinase, NDK |
| 2 | G, J, L, N, P (A, C, D, E, F) | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) PubChem (888) | |||
| 3 | H, I, K, M, O... (A, B, C, D, E...) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 6 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 4 | R, S, T, U, V... (A, B, C, D, E...) | water | water | 18.0 | 150 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 2 - 137 (UniProt: Q5UQL3)
| PDB | External Database | Details |
|---|---|---|
| Tyr -4 | - | expression tag |
| Lys -3 | - | expression tag |
| Lys -2 | - | expression tag |
| Ala -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Leu 1 | - | expression tag |
| Leu 62 | Asn 62 | engineered mutation |
| Gly 107 | Arg 107 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 97202.4 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 2780.7 | |
| All* | Total formula weight | 99983.2 |
