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3EPX

Crystal structure of Trypanosoma vivax nucleoside hydrolase in complex with the inhibitor (2R,3R,4S)-2-(hydroxymethyl)-1-(quinolin-8-ylmethyl)pyrrolidin-3,4-diol

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
IAG-nucleoside hydrolasepolymer33837621.92UniProt (Q9GPQ4)
Pfam (PF01156)
Trypanosoma vivax
2C, F
(A, B)
CALCIUM IONnon-polymer40.12Chemie (CA)
3D, G
(A, B)
(2R,3R,4S)-2-(hydroxymethyl)-1-(quinolin-8-ylmethyl)pyrrolidine-3,4-diolnon-polymer274.32Chemie (IMQ)
4E
(A)
GLYCEROLnon-polymer92.11Chemie (GOL)
5H, I
(A, B)
waterwater18.0675Chemie (HOH)
Sequence modifications
A, B: 2 - 327 (UniProt: Q9GPQ4)
PDBExternal DatabaseDetails
Met -10-expression tag
Arg -9-expression tag
Gly -8-expression tag
Ser -7-expression tag
His -6-expression tag
His -5-expression tag
His -4-expression tag
His -3-expression tag
His -2-expression tag
His -1-expression tag
Gly 0-expression tag
Ser 1-expression tag
Asn 301Lys 301conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight75243.7
Non-Polymers*Number of molecules5
Total formula weight720.9
All*Total formula weight75964.6
*Water molecules are not included.

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PDB entries from 2025-12-10

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