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3EPK

Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(A, B)
tRNA isopentenyltransferasepolymer40948199.02UniProt (P07884)
Pfam (PF01715)
Saccharomyces cerevisiae (Baker's yeast)Isopentenyl-diphosphate: tRNA isopentenyltransferase, IPP transferase, IPTase, IPPT
2B, D
(E, F)
tRNApolymer6922224.12
3E, O
(A, B)
ZINC IONnon-polymer65.42Chemie (ZN)
4F, G, H, J, K...
(A, E, B, F)
MAGNESIUM IONnon-polymer24.314Chemie (MG)
5I
(A)
DIMETHYLALLYL S-THIOLODIPHOSPHATEnon-polymer262.21Chemie (DST)
6T
(B)
PYROPHOSPHATEnon-polymer178.01Chemie (PPV)
7W, X, Y, Z
(A, E, B, F)
waterwater18.0236Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight140846.2
Non-Polymers*Number of molecules18
Total formula weight911.2
All*Total formula weight141757.5
*Water molecules are not included.

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PDB entries from 2025-07-09

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