3BWR
SV40 VP1 pentamer in complex with GM1 oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Capsid protein VP1 | polymer | 272 | 29734.4 | 5 | UniProt (P03087) Pfam (PF00718) | Simian virus 40 | |
| 2 | F, G, H (F, G, H) | beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 998.9 | 3 | In PDB GlyTouCan (G48558GR) | |||
| 3 | I, J, K, L, M... (A, B, C, D, E) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
| 4 | O, P, Q, R, S (A, B, C, D, E) | water | water | 18.0 | 855 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 30 - 297 (UniProt: P03087)
| PDB | External Database | Details |
|---|---|---|
| Gly 26 | - | expression tag |
| Ser 27 | - | expression tag |
| His 28 | - | expression tag |
| Met 29 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 148672.1 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 2996.7 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 372.4 | |
| All* | Total formula weight | 152041.2 |
