3B40
Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Probable dipeptidase | polymer | 417 | 45809.8 | 1 | UniProt (Q9I187) Pfam (PF01244) UniProt (by SIFTS) (Q5DIQ1) | Pseudomonas aeruginosa | PvdM |
| 2 | B, C (A) | CADMIUM ION | non-polymer | 112.4 | 2 | Chemie (CD) | |||
| 3 | D (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 4 | E, F (A) | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
| 5 | G (A) | water | water | 18.0 | 376 | Chemie (HOH) |
Sequence modifications
A: 34 - 448 (UniProt: Q9I187)
| PDB | External Database | Details |
|---|---|---|
| Ser 32 | - | expression tag |
| Leu 33 | - | expression tag |
| Gln 44 | Lys 44 | engineered mutation |
| Val 62 | Ile 62 | engineered mutation |
| Leu 64 | Pro 64 | engineered mutation |
| Thr 69 | Glu 69 | engineered mutation |
| Val 73 | Phe 73 | engineered mutation |
| Gly 79 | Asn 79 | engineered mutation |
| Ser 195 | Asn 195 | engineered mutation |
| Ala 203 | Ser 203 | engineered mutation |
| Ser 215 | Thr 215 | engineered mutation |
| Pro 216 | Ala 216 | engineered mutation |
| Asp 314 | Asn 314 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 45809.8 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 329.3 | |
| All* | Total formula weight | 46139.1 |
