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3AYZ

Membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus in an air-oxidized condition

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(A, C)
Membrane-bound hydrogenase large subunitpolymer59666574.42UniProt (F2Z6J6)
Pfam (PF00374)
Hydrogenovibrio marinusMEMBRANE-BOUND RESPIRATORY NI-FE HYDROGENASE LARGE SUBUNIT
2B, D
(B, D)
Membrane-bound hydrogenase small subunitpolymer28331306.72UniProt (F2Z6J5)
Pfam (PF01058)
Pfam (PF14720)
Hydrogenovibrio marinusMEMBRANE-BOUND RESPIRATORY NI-FE HYDROGENASE SMALL SUBUNIT
3E, W
(A, C)
FE (II) IONnon-polymer55.82Chemie (FE2)
4F, X
(A, C)
NICKEL (III) IONnon-polymer58.72Chemie (3NI)
5G, Y
(A, C)
CARBON MONOXIDEnon-polymer28.02Chemie (CMO)
6AA, H, I, Z
(C, A)
CYANIDE IONnon-polymer26.04Chemie (CYN)
7BA, CA, DA, EA, FA...
(C, A)
OXYGEN ATOMnon-polymer16.010Chemie (O)
8GA, HA, O, P
(C, A)
GLYCEROLnon-polymer92.14Chemie (GOL)
9Q, V
(A, C)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
10IA, R
(D, B)
FE4-S3 CLUSTERnon-polymer319.62Chemie (F4S)
11JA, S
(D, B)
FE4-S3 CLUSTERnon-polymer319.62Chemie (SF3)
12KA, T
(D, B)
FE3-S4 CLUSTERnon-polymer295.82Chemie (F3S)
13LA, U
(D, B)
IRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
14MA, NA, OA, PA
(A, B, C, D)
waterwater18.01631Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight195762.1
Non-Polymers*Number of molecules34
Total formula weight3539.3
All*Total formula weight199301.4
*Water molecules are not included.

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PDB entries from 2025-08-27

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