3ARE
Ternary crystal structure of the mouse NKT TCR-CD1d-4'deoxy-alpha-galactosylceramide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Antigen-presenting glycoprotein CD1d1 | polymer | 302 | 34662.0 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
2 | B | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
3 | C | NKT Valpha14-Jalpha18,NKT Valpha14-Jalpha18 | polymer | 207 | 22779.2 | 1 | Pfam (PF09291) UniProt (by SIFTS) (P01848) In PDB | Mus musculus (mouse) | |
4 | D | Vbeta8.2,Vbeta8.2 | polymer | 244 | 27166.9 | 1 | Pfam (PF07654) UniProt (by SIFTS) (P01850) In PDB | Mus musculus (mouse) | |
5 | E, F | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
6 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
7 | A | N-{(2S,3R)-1-[(4-deoxy-alpha-D-xylo-hexopyranosyl)oxy]-3-hydroxyoctadecan-2-yl}hexacosanamide | non-polymer | 826.3 | 1 | Chemie (4GH) | |||
8 | A | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
9 | water | water | 18.0 | 55 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
C: 1 - 116 (PDB: 3ARE)
C: 117 - 210 (PDB: 3ARE)
D: 1 - 117 (PDB: 3ARE)
D: 118 - 247 (PDB: 3ARE)
PDB | External Database | Details |
---|---|---|
His 201 | Asp 219 | conflict |
Gly 280 | - | expression tag |
Ser 281 | - | expression tag |
Leu 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
Ile 285 | - | expression tag |
Leu 286 | - | expression tag |
Asp 287 | - | expression tag |
Ala 288 | - | expression tag |
Gln 289 | - | expression tag |
Lys 290 | - | expression tag |
Met 291 | - | expression tag |
Val 292 | - | expression tag |
Trp 293 | - | expression tag |
Asn 294 | - | expression tag |
His 295 | - | expression tag |
Arg 296 | - | expression tag |
His 297 | - | expression tag |
His 298 | - | expression tag |
His 299 | - | expression tag |
His 300 | - | expression tag |
His 301 | - | expression tag |
His 302 | - | expression tag |
C: 117 - 210 (PDB: 3ARE)
D: 1 - 117 (PDB: 3ARE)
D: 118 - 247 (PDB: 3ARE)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 96268.5 | |
Branched | Number of molecules | 2 |
Total formula weight | 848.8 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 1153.7 | |
All* | Total formula weight | 98270.9 |