3ARD
Ternary crystal structure of the mouse NKT TCR-CD1d-3'deoxy-alpha-galactosylceramide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Antigen-presenting glycoprotein CD1d1 | polymer | 302 | 34662.0 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) | Mus musculus (Mouse) | |
| 2 | B (B) | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 3 | C (C) | NKT Valpha14-Jalpha18,NKT Valpha14-Jalpha18 | polymer | 207 | 22779.2 | 1 | Pfam (PF09291) UniProt (by SIFTS) (P01848) | Mus musculus (mouse) | |
| 4 | D (D) | Vbeta8.2,Vbeta8.2 | polymer | 244 | 27166.9 | 1 | Pfam (PF07654) UniProt (by SIFTS) (P01850) | Mus musculus (mouse) | |
| 5 | E, F, G (E, F, G) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 6 | H (A) | N-{(2S,3R)-1-[(3-deoxy-alpha-D-xylo-hexopyranosyl)oxy]-3-hydroxyoctadecan-2-yl}hexacosanamide | non-polymer | 826.3 | 1 | Chemie (3GH) | |||
| 7 | I, J, K, L (A, B, C, D) | water | water | 18.0 | 18 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
C: 1 - 116 (PDB: 3ARD)
C: 117 - 210 (PDB: 3ARD)
D: 1 - 117 (PDB: 3ARD)
D: 118 - 247 (PDB: 3ARD)
| PDB | External Database | Details |
|---|---|---|
| His 201 | Asp 219 | conflict |
| Gly 280 | - | expression tag |
| Ser 281 | - | expression tag |
| Leu 282 | - | expression tag |
| His 283 | - | expression tag |
| His 284 | - | expression tag |
| Ile 285 | - | expression tag |
| Leu 286 | - | expression tag |
| Asp 287 | - | expression tag |
| Ala 288 | - | expression tag |
| Gln 289 | - | expression tag |
| Lys 290 | - | expression tag |
| Met 291 | - | expression tag |
| Val 292 | - | expression tag |
| Trp 293 | - | expression tag |
| Asn 294 | - | expression tag |
| His 295 | - | expression tag |
| Arg 296 | - | expression tag |
| His 297 | - | expression tag |
| His 298 | - | expression tag |
| His 299 | - | expression tag |
| His 300 | - | expression tag |
| His 301 | - | expression tag |
| His 302 | - | expression tag |
C: 117 - 210 (PDB: 3ARD)
D: 1 - 117 (PDB: 3ARD)
D: 118 - 247 (PDB: 3ARD)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 96268.5 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1273.2 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 826.3 | |
| All* | Total formula weight | 98368.0 |
