38QP
LPT translocon complex from Bacteroides thetaiotaomicron built in composite volume
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Organic solvent tolerance-like N-terminal domain-containing protein | polymer | 576 | 66298.2 | 1 | UniProt (Q8A122) | Bacteroides thetaiotaomicron | |
| 2 | B (E) | Lipopolysaccharide-assembly | polymer | 175 | 19817.4 | 1 | UniProt (Q89ZK1) | Bacteroides thetaiotaomicron | |
| 3 | C (Q) | LptQ | polymer | 242 | 27337.4 | 1 | UniProt (Q89Z15) | Bacteroides thetaiotaomicron | |
| 4 | D (T) | DUF5683 domain-containing protein | polymer | 295 | 33629.8 | 1 | UniProt (Q8A0M1) | Bacteroides thetaiotaomicron | |
| 5 | E (V) | Outer membrane protein beta-barrel domain-containing protein | polymer | 240 | 26514.3 | 1 | UniProt (Q8AA89) | Bacteroides thetaiotaomicron | |
| 6 | F (D) | LPS-assembly protein LptD central domain-containing protein | polymer | 934 | 105638.8 | 1 | UniProt (Q8A5V3) | Bacteroides thetaiotaomicron | |
| 7 | G (N) | Porin | polymer | 680 | 78807.6 | 1 | UniProt (Q8AAY4) | Bacteroides thetaiotaomicron | |
| 8 | H (P) | SbsA Ig-like domain-containing protein | polymer | 642 | 74102.7 | 1 | UniProt (Q8A2G4) | Bacteroides thetaiotaomicron | |
| 9 | I, J (R1, R2) | Calcium-binding protein P | polymer | 183 | 20957.9 | 2 | UniProt (Q89Z14) | Bacteroides thetaiotaomicron | |
| 10 | K (U) | Periplasmic protease | polymer | 484 | 54347.8 | 1 | UniProt (Q8ABF6) | Bacteroides thetaiotaomicron | |
| 11 | L, M (J, S) | alpha-L-rhamnopyranose-(1-4)-alpha-D-galactopyranose | branched | 326.3 | 2 | In PDB GlyTouCan (G01325AO) | |||
| 12 | AA, N, O, P, Q... (R2, A, D, P) | alpha-D-galactopyranose | non-polymer | 180.2 | 11 | Chemie (GLA) PubChem (439357) | |||
| 13 | R, S, V (D, N) | Lauryl Maltose Neopentyl Glycol | non-polymer | 1005.2 | 3 | Chemie (LMN) PubChem (70678409) |
Sequence modifications
Q: 55 - 242 (UniProt: Q89Z15)
D: -31 - 902 (UniProt: Q8A5V3)
| PDB | External Database | Details |
|---|---|---|
| Val 1 | - | expression tag |
| Leu 2 | - | expression tag |
| Leu 3 | - | expression tag |
| Leu 4 | - | expression tag |
| Phe 5 | - | expression tag |
| Cys 6 | - | expression tag |
| Ile 7 | - | expression tag |
| Gly 8 | - | expression tag |
| Ile 9 | - | expression tag |
| Pro 10 | - | expression tag |
| Thr 11 | - | expression tag |
| Ile 12 | - | expression tag |
| Ala 13 | - | expression tag |
| Gln 14 | - | expression tag |
| Gln 15 | - | expression tag |
| Gln 16 | - | expression tag |
| Arg 17 | - | expression tag |
| Pro 18 | - | expression tag |
| Thr 19 | - | expression tag |
| Pro 20 | - | expression tag |
| Val 21 | - | expression tag |
| Gln 22 | - | expression tag |
| Lys 23 | - | expression tag |
| Arg 24 | - | expression tag |
| Asp 25 | - | expression tag |
| Gln 26 | - | expression tag |
| Lys 27 | - | expression tag |
| Lys 28 | - | expression tag |
| Lys 29 | - | expression tag |
| Glu 30 | - | expression tag |
| Ala 31 | - | expression tag |
| Val 32 | - | expression tag |
| Val 33 | - | expression tag |
| Asp 34 | - | expression tag |
| Thr 35 | - | expression tag |
| Ile 36 | - | expression tag |
| Pro 37 | - | expression tag |
| Phe 38 | - | expression tag |
| Tyr 39 | - | expression tag |
| Asn 40 | - | expression tag |
| Gly 41 | - | expression tag |
| Thr 42 | - | expression tag |
| Tyr 43 | - | expression tag |
| Val 44 | - | expression tag |
| Gly 45 | - | expression tag |
| Val 46 | - | expression tag |
| Asp 47 | - | expression tag |
| Ile 48 | - | expression tag |
| Tyr 49 | - | expression tag |
| Gly 50 | - | expression tag |
| Ile 51 | - | expression tag |
| Gly 52 | - | expression tag |
| Ser 53 | - | expression tag |
| Lys 54 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Trp 32 | - | insertion |
| Ser 33 | - | insertion |
| His 34 | - | insertion |
| Pro 35 | - | insertion |
| Gln 36 | - | insertion |
| Phe 37 | - | insertion |
| Glu 38 | - | insertion |
| Lys 39 | - | insertion |
| Gly 40 | - | insertion |
| Gly 41 | - | insertion |
| Gly 42 | - | insertion |
| Ser 43 | - | insertion |
| Gly 44 | - | insertion |
| Gly 45 | - | insertion |
| Gly 46 | - | insertion |
| Ser 47 | - | insertion |
| Gly 48 | - | insertion |
| Gly 49 | - | insertion |
| Ser 50 | - | insertion |
| Ala 51 | - | insertion |
| Trp 52 | - | insertion |
| Ser 53 | - | insertion |
| His 54 | - | insertion |
| Pro 55 | - | insertion |
| Gln 56 | - | insertion |
| Phe 57 | - | insertion |
| Glu 58 | - | insertion |
| Lys 59 | - | insertion |
| Val 60 | - | insertion |
| Asp 61 | - | insertion |
| Ser 62 | - | insertion |
| Val 63 | - | insertion |
| Val 72 | Asp 72 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 528409.8 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 652.6 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 4997.3 | |
| All* | Total formula weight | 534059.7 |
