2ZOK
Crystal structure of H-2Db in complex with JHMV epitope S510
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, C, E, G) | H-2 class I histocompatibility antigen, D-B alpha chain | polymer | 278 | 32463.1 | 4 | UniProt (P01899) Pfam (PF00129) Pfam (PF07654) | Mus musculus (mouse) | H-2D(B) |
| 2 | B, D, F, H (B, D, F, H) | Beta-2-microglobulin | polymer | 100 | 11835.6 | 4 | UniProt (P01887) Pfam (PF07654) | Mus musculus (mouse) | |
| 3 | I, J, K, L (I, L, J, K) | 9-meric peptide from Spike glycoprotein | polymer | 9 | 1009.1 | 4 | UniProt (Q02385) | peptidic epitope S510 | |
| 4 | M, P, R, T (A, E, G, I) | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
| 5 | N, O, Q, S (A, C, E, G) | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
| 6 | AA, BA, CA, DA, EA... (G, H, I, L, J...) | water | water | 18.0 | 969 | Chemie (HOH) |
Sequence modifications
A, C, E, G: 1 - 275 (UniProt: P01899)
B, D, F, H: 1 - 99 (UniProt: P01887)
I, L, J, K: 1 - 9 (UniProt: Q02385)
| PDB | External Database | Details |
|---|---|---|
| Arg 276 | - | expression tag |
| Trp 277 | - | expression tag |
| Glu 278 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Aba 1 | Cys 510 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 181231.2 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 752.6 | |
| All* | Total formula weight | 181983.8 |
