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2YU9

RNA polymerase II elongation complex in 150 mm MG+2 with UTP

Replaces:  2NVS
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'polymer103264.01synthetic construct
2T28-MER DNA template strandpolymer288534.51synthetic construct
3N5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'polymer144286.81synthetic construct
4ADNA-directed RNA polymerase II largest subunitpolymer1733191821.61UniProt (P04050)
Pfam (PF04997)
Pfam (PF05001)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Pfam (PF04992)
Pfam (PF04990)
In PDB
Saccharomyces cerevisiae (baker's yeast)RNA polymerase II subunit 1, B220
5BDNA-directed RNA polymerase II 140 kDa polypeptidepolymer1224138937.31UniProt (P08518)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF04566)
Pfam (PF04567)
Pfam (PF00562)
Pfam (PF04560)
In PDB
Saccharomyces cerevisiae (baker's yeast)B150, RNA polymerase II subunit 2
6CDNA-directed RNA polymerase II 45 kDa polypeptidepolymer31835330.51UniProt (P16370)
Pfam (PF01193)
Pfam (PF01000)
In PDB
Saccharomyces cerevisiae (baker's yeast)B44.5
7EDNA-directed RNA polymerases I, II, and III 27 kDa polypeptidepolymer21525117.11UniProt (P20434)
Pfam (PF03871)
Pfam (PF01191)
In PDB
Saccharomyces cerevisiae (baker's yeast)ABC27
8FDNA-directed RNA polymerases I, II, and III 23 kDa polypeptidepolymer15517931.81UniProt (P20435)
Pfam (PF01192)
In PDB
Saccharomyces cerevisiae (baker's yeast)ABC23
9HDNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptidepolymer14616525.41UniProt (P20436)
Pfam (PF03870)
In PDB
Saccharomyces cerevisiae (baker's yeast)ABC14.4
10IDNA-directed RNA polymerase II subunit 9polymer12214308.21UniProt (P27999)
Pfam (PF02150)
Pfam (PF01096)
In PDB
Saccharomyces cerevisiae (baker's yeast)DNA-directed RNA polymerase II 14.2 kDa polypeptide, B12.6
11JDNA-directed RNA polymerases I/II/III subunit 10polymer708290.71UniProt (P22139)
Pfam (PF01194)
In PDB
Saccharomyces cerevisiae (baker's yeast)DNA- directed RNA polymerases I, II, and III 8.3 kDa polypeptide, ABC10- beta, ABC8
12KDNA-directed RNA polymerase II 13.6 kDa polypeptidepolymer12013633.51UniProt (P38902)
Pfam (PF13656)
In PDB
Saccharomyces cerevisiae (baker's yeast)B13.6
13LDNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptidepolymer707730.01UniProt (P40422)
Pfam (PF03604)
In PDB
Saccharomyces cerevisiae (baker's yeast)ABC10-alpha
14A, B, C, I, J...ZINC IONnon-polymer65.48Chemie (ZN)
15AMAGNESIUM IONnon-polymer24.32Chemie (MG)
16AURIDINE 5'-TRIPHOSPHATEnon-polymer484.11Chemie (UTP)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains13
Total formula weight485711.3
Non-Polymers*Number of molecules11
Total formula weight1056.0
All*Total formula weight486767.3
*Water molecules are not included.

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PDB entries from 2024-06-26

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