2YFJ
Crystal structure of Biphenyl dioxygenase variant RR41 with dibenzofuran
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G, I... (A, C, E, G, I...) | BIPHENYL DIOXYGENASE SUBUNIT ALPHA | polymer | 459 | 51562.4 | 6 | UniProt (P37333) Pfam (PF00355) Pfam (PF00848) | BURKHOLDERIA XENOVORANS | BIPHENYL DIOXYGENASE VARIANT RR41 ALPHA SUBUNIT, BIPHENYL 2\,3-DIOXYGENASE |
| 2 | B, D, F, H, J... (B, D, F, H, J...) | BIPHENYL DIOXYGENASE SUBUNIT BETA | polymer | 188 | 22113.8 | 6 | UniProt (P37334) Pfam (PF00866) | BURKHOLDERIA XENOVORANS | BIPHENYL DIOXYGENASE VARIANT RR41 BETA, BIPHENYL 2\,3-DIOXYGENASE |
| 3 | M, P, S, V, X... (A, C, E, G, I...) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 6 | Chemie (FES) | |||
| 4 | AA, N, Q, T, W... (K, A, C, E, G...) | FE (II) ION | non-polymer | 55.8 | 6 | Chemie (FE2) | |||
| 5 | O, R, U (A, C, E) | DIBENZOFURAN | non-polymer | 168.2 | 3 | Chemie (1IT) | |||
| 6 | BA, CA, DA, EA, FA... (A, B, C, D, E...) | water | water | 18.0 | 652 | Chemie (HOH) |
Sequence modifications
A, C, E, G, I, K: 1 - 459 (UniProt: P37333)
| PDB | External Database | Details |
|---|---|---|
| Ala 335 | Thr 335 | engineered mutation |
| Met 336 | Phe 336 | engineered mutation |
| Gln 338 | Asn 338 | engineered mutation |
| Val 341 | Ile 341 | engineered mutation |
| Phe 409 | Leu 409 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 442057.5 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1894.6 | |
| All* | Total formula weight | 443952.0 |
