2WSF
Improved Model of Plant Photosystem I
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | AT3G54890 | polymer | 241 | 26021.9 | 1 | UniProt (Q9C5R7) Pfam (PF00504) UniProt (by SIFTS) (Q01667) | ARABIDOPSIS THALIANA (THALE CRESS) | LHCA1 |
| 2 | B (2) | TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM PHOTOSYSTEM I | polymer | 269 | 28926.7 | 1 | UniProt (Q41038) Pfam (PF00504) | PISUM SATIVUM (PEA) | LHCA2 |
| 3 | C (3) | LHCA3 | polymer | 276 | 29852.1 | 1 | UniProt (by SIFTS) (C6TEX2) | GLYCINE MAX (SOYBEAN) | |
| 4 | D (4) | CHLOROPHYLL A-B BINDING PROTEIN P4, CHLOROPLASTIC | polymer | 251 | 27182.0 | 1 | UniProt (Q9SQL2) | PISUM SATIVUM (PEA) | LHCI TYPE III CAB-P4 LHCA4 |
| 5 | E (A) | PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 | polymer | 758 | 84284.5 | 1 | UniProt (P05310) | PISUM SATIVUM (PEA) | PSAA, PSI-A |
| 6 | F (B) | PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 | polymer | 734 | 82491.0 | 1 | UniProt (P05311) | PISUM SATIVUM (PEA) | PSAB, PSI-B |
| 7 | G (C) | PHOTOSYSTEM I IRON-SULFUR CENTER | polymer | 81 | 8991.5 | 1 | UniProt (P10793) | PISUM SATIVUM (PEA) | PSAC, PHOTOSYSTEM I SUBUNIT VII, 9 KDA POLYPEPTIDE, PSI-C |
| 8 | H (D) | PHOTOSYSTEM I REACTION CENTER SUBUNIT II, CHLOROPLASTIC | polymer | 212 | 23170.6 | 1 | UniProt (P12353) Pfam (PF02531) | SPINACIA OLERACEA (SPINACH) | PSAD, PHOTOSYSTEM I 20 KDA SUBUNIT, PSI-D |
| 9 | I (E) | PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC | polymer | 143 | 14985.0 | 1 | UniProt (Q9S831) Pfam (PF02427) | ARABIDOPSIS THALIANA (THALE CRESS) | PSAE, PSI-E A |
| 10 | J (F) | PHOTOSYSTEM I REACTION CENTER SUBUNIT III, CHLOROPLASTIC | polymer | 231 | 25445.5 | 1 | UniProt (P12355) Pfam (PF02507) | SPINACIA OLERACEA (SPINACH) | PSAF, LIGHT-HARVESTING COMPLEX I 17 KDA PROTEIN, PSI-F |
| 11 | K (G) | PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC | polymer | 167 | 18232.7 | 1 | UniProt (P12357) Pfam (PF01241) | SPINACIA OLERACEA (SPINACH) | PSAG, PSI-G, PHOTOSYSTEM I 9 KDA PROTEIN |
| 12 | L (H) | PHOTOSYSTEM I REACTION CENTER SUBUNIT VI, CHLOROPLASTIC | polymer | 144 | 15341.6 | 1 | UniProt (P22179) Pfam (PF03244) | SPINACIA OLERACEA (SPINACH) | PSAH, PSI-H, LIGHT-HARVESTING COMPLEX I 11 KDA PROTEIN |
| 13 | M (I) | PHOTOSYSTEM I REACTION CENTER SUBUNIT VIII | polymer | 40 | 4474.5 | 1 | UniProt (P17227) | PISUM SATIVUM (PEA) | PSAI, PSI-I |
| 14 | N (J) | PHOTOSYSTEM I REACTION CENTER SUBUNIT IX | polymer | 44 | 5079.9 | 1 | UniProt (P17230) Pfam (PF01701) | SPINACIA OLERACEA (SPINACH) | PSAJ, PSI-J |
| 15 | O (K) | PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC | polymer | 131 | 13742.9 | 1 | UniProt (P36886) | HORDEUM VULGARE | PSAK, PHOTOSYSTEM I SUBUNIT X, PSI-K, LIGHT-HARVESTING COMPLEX I 7 KDA PROTEIN |
| 16 | P (L) | PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC | polymer | 216 | 22957.7 | 1 | UniProt (Q41385) Pfam (PF02605) | SPINACIA OLERACEA (SPINACH) | PSAL, PSI-L, PSI SUBUNIT V |
| 17 | Q (N) | PHOTOSYSTEM I-N SUBUNIT | polymer | 170 | 18461.0 | 1 | UniProt (Q84U30) Pfam (PF05479) | PHASEOLUS VULGARIS | PSAN, PSI-N |
| 18 | R (R) | PHOTOSYSTEM I-N SUBUNIT | polymer | 53 | 4528.6 | 1 | PISUM SATIVUM (PEA) | ||
| 19 | AA, BA, CA, DA, EA... (W, X, Y, Z, a...) | beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose | branched | 342.3 | 13 | In PDB BIRD (PRD_900003) | sucrose | ||
| 20 | AB, AC, AE, AG, AI... (2, 3, A, B, H...) | CHLOROPHYLL A | non-polymer | 893.5 | 173 | Chemie (CLA) | |||
| 21 | AD, AF, AJ, BF, BI... (4, A, L, H, B...) | DODECYL-ALPHA-D-MALTOSIDE | non-polymer | 510.6 | 48 | Chemie (LMU) PubChem (97038234) PubChem (97038235) PubChem (97294875) PubChem (100976848) PubChem (101111381) PubChem (102219025) PubChem (102565427) PubChem (117753833) PubChem (140479759) PubChem (46936627) PubChem (114880) PubChem (445456) PubChem (123281924) PubChem (118443377) PubChem (2802066) PubChem (124184997) PubChem (124196217) PubChem (124196220) PubChem (126735853) PubChem (126735860) PubChem (9849225) PubChem (129720403) PubChem (134694723) PubChem (16220143) PubChem (140505128) PubChem (140841257) PubChem (153835411) PubChem (154810097) PubChem (155885597) PubChem (24802120) PubChem (25021193) PubChem (159812235) PubChem (58112562) PubChem (58253045) PubChem (3481630) PubChem (163184859) PubChem (53393702) PubChem (169619620) PubChem (59615220) PubChem (60087035) PubChem (68322761) PubChem (68338004) PubChem (173767704) PubChem (173885518) PubChem (68441652) PubChem (70796428) PubChem (70813879) PubChem (70839937) PubChem (75487624) PubChem (10413991) PubChem (89796216) PubChem (90817611) PubChem (91094859) PubChem (91608950) PubChem (95566087) PubChem (95566088) PubChem (95566089) PubChem (95566090) PubChem (96327540) PubChem (98046621) PubChem (98046622) PubChem (98046623) PubChem (101111379) PubChem (117716045) PubChem (44119948) PubChem (56845466) | |||
| 22 | BH, CH, DH, EH, EJ... (B, L, I, 2, J...) | BETA-CAROTENE | non-polymer | 536.9 | 16 | Chemie (BCR) PubChem (129651951) PubChem (145925599) PubChem (159562859) PubChem (160505766) PubChem (173398668) PubChem (176490061) PubChem (5280489) PubChem (5315709) PubChem (5353436) PubChem (5927371) PubChem (6477957) PubChem (124919639) PubChem (124919640) PubChem (132274419) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (21672398) PubChem (146673260) PubChem (152743364) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (5356616) PubChem (172654026) PubChem (172878405) PubChem (9828626) PubChem (91827292) PubChem (92863345) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (46783370) PubChem (573) PubChem (86765360) | |||
| 23 | AH, VE (B, A) | PHYLLOQUINONE | non-polymer | 450.7 | 2 | Chemie (PQN) PubChem (4812) PubChem (5284607) PubChem (7048753) PubChem (7048754) PubChem (9846607) PubChem (133612476) PubChem (21896458) PubChem (162999945) PubChem (5280483) PubChem (5315258) PubChem (7048755) PubChem (92436622) PubChem (93233163) PubChem (93971968) PubChem (57138572) | |||
| 24 | JF, JH, KH (A, C) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
| 25 | FH (B) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 1 | Chemie (LMG) | |||
| 26 | FI (H) | UNKNOWN LIGAND | non-polymer | 1 | Chemie (UNL) |
Sequence modifications
1: -43 - 197 (UniProt: Q9C5R7)
2: -57 - 194 (UniProt: Q41038)
2: 196 - 200 (UniProt: Q41038)
2: 201 - 211 (UniProt: Q41038)
2: 195 - 195 (PDB: 2WSF)
4: -50 - 159 (UniProt: Q9SQL2)
D: -55 - 156 (UniProt: P12353)
| PDB | External Database | Details |
|---|---|---|
| Ile -33 | Lys 11 | conflict |
| Arg -1 | Lys 43 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | Gly 258 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Ala 195 | - | insertion |
2: 195 - 195 (PDB: 2WSF)
4: -50 - 159 (UniProt: Q9SQL2)
| PDB | External Database | Details |
|---|---|---|
| - | Ala 211 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Gly -52 | Ala 4 | conflict |
| Pro -50 | Gln 6 | conflict |
| Arg -44 | Pro 12 | conflict |
| Glu -34 | Asp 22 | conflict |
| Leu -11 | His 45 | conflict |
| Thr -9 | Ser 47 | conflict |
| Thr 12 | Pro 68 | conflict |
| Ala 14 | Gly 70 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 454169.6 | |
| Branched | Number of molecules | 13 |
| Total formula weight | 4449.9 | |
| Non-Polymers* | Number of molecules | 244 |
| Total formula weight | 190416.6 | |
| All* | Total formula weight | 649036.0 |






