2W3S
Crystal Structure of Xanthine Dehydrogenase (desulfo form) from Rhodobacter capsulatus in Complex with Xanthine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, C, E, G) | XANTHINE DEHYDROGENASE | polymer | 462 | 49420.5 | 4 | UniProt (O54050) Pfam (PF00111) Pfam (PF01799) Pfam (PF00941) Pfam (PF03450) | RHODOBACTER CAPSULATUS | |
| 2 | B, D, F, H (B, D, F, H) | XANTHINE DEHYDROGENASE | polymer | 777 | 82978.0 | 4 | UniProt (O54051) Pfam (PF01315) Pfam (PF02738) Pfam (PF20256) | RHODOBACTER CAPSULATUS | |
| 3 | DA, EA, I, J, P... (G, A, C, E) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 8 | Chemie (FES) | |||
| 4 | FA, K, R, Y (G, A, C, E) | FLAVIN-ADENINE DINUCLEOTIDE | non-polymer | 785.5 | 4 | Chemie (FAD) | |||
| 5 | GA, L, S, Z (H, B, D, F) | PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER | non-polymer | 395.4 | 4 | Chemie (MTE) | |||
| 6 | AA, HA, M, T (F, H, B, D) | CALCIUM ION | non-polymer | 40.1 | 4 | Chemie (CA) | |||
| 7 | BA, IA, N, U (F, H, B, D) | XANTHINE | non-polymer | 152.1 | 4 | Chemie (XAN) | |||
| 8 | CA, JA, O, V (F, H, B, D) | HYDROXY(DIOXO)MOLYBDENUM | non-polymer | 144.9 | 4 | Chemie (MOM) | |||
| 9 | KA, LA, MA, NA, OA... (A, B, C, D, E...) | water | water | 18.0 | 38 | Chemie (HOH) |
Sequence modifications
A, C, E, G: 1 - 462 (UniProt: O54050)
B, D, F, H: 1 - 777 (UniProt: O54051)
| PDB | External Database | Details |
|---|---|---|
| Trp 26 | Leu 26 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 772 | Gly 772 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 529594.2 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 7478.7 | |
| All* | Total formula weight | 537072.9 |
