2VQF
Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S RRNA | polymer | 1522 | 493958.3 | 1 | THERMUS THERMOPHILUS | ||
| 2 | B (B) | 30S RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) | THERMUS THERMOPHILUS | |
| 3 | C (C) | 30S RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | THERMUS THERMOPHILUS | |
| 4 | D (D) | 30S RIBOSOMAL PROTEIN S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | THERMUS THERMOPHILUS | |
| 5 | E (E) | 30S RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | THERMUS THERMOPHILUS | |
| 6 | F (F) | 30S RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | THERMUS THERMOPHILUS | TS9 |
| 7 | G (G) | 30S RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | THERMUS THERMOPHILUS | |
| 8 | H (H) | 30S RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | THERMUS THERMOPHILUS | |
| 9 | I (I) | 30S RIBOSOMAL PROTEIN S9 | polymer | 128 | 14429.7 | 1 | UniProt (P62669) Pfam (PF00380) UniProt (by SIFTS) (P80374) | THERMUS THERMOPHILUS | |
| 10 | J (J) | 30S RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | THERMUS THERMOPHILUS | |
| 11 | K (K) | 30S RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | THERMUS THERMOPHILUS | |
| 12 | L (L) | 30S RIBOSOMAL PROTEIN S12 | polymer | 135 | 14920.8 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | THERMUS THERMOPHILUS | |
| 13 | M (M) | 30S RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) | THERMUS THERMOPHILUS | |
| 14 | N (N) | 30S RIBOSOMAL PROTEIN S14 TYPE Z | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | THERMUS THERMOPHILUS | 30S RIBOSOMAL PROTEIN S14 |
| 15 | O (O) | 30S RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | THERMUS THERMOPHILUS | |
| 16 | P (P) | 30S RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | THERMUS THERMOPHILUS | |
| 17 | Q (Q) | 30S RIBOSOMAL PROTEIN S17 | polymer | 105 | 12324.7 | 1 | UniProt (P24321) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | THERMUS THERMOPHILUS | |
| 18 | R (R) | 30S RIBOSOMAL PROTEIN S18 | polymer | 88 | 10244.3 | 1 | UniProt (P80382) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) | THERMUS THERMOPHILUS | |
| 19 | S (S) | 30S RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | THERMUS THERMOPHILUS | |
| 20 | T (T) | 30S RIBOSOMAL PROTEIN S20 | polymer | 106 | 11722.1 | 1 | UniProt (P62661) Pfam (PF01649) UniProt (by SIFTS) (P80380) | THERMUS THERMOPHILUS | |
| 21 | U (U) | 30S RIBOSOMAL PROTEIN THX | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | THERMUS THERMOPHILUS | S31 |
| 22 | V (X) | 5'-R(*UP*UP*GP*AP*AP*AP)-3' | polymer | 6 | 1900.2 | 1 | THERMUS THERMOPHILUS | RNA | |
| 23 | W (Y) | 5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)-3' | polymer | 17 | 5548.4 | 1 | THERMUS THERMOPHILUS | RNA | |
| 24 | X (A) | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) | |||
| 25 | AA, AB, AC, AD, AE... (A, B, E, I, K...) | MAGNESIUM ION | non-polymer | 24.3 | 214 | Chemie (MG) | |||
| 26 | AI, AJ, AK, AL, BI... (A, T, D, E, I...) | POTASSIUM ION | non-polymer | 39.1 | 73 | Chemie (K) | |||
| 27 | FK, RK (D, N) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 23 |
| Total formula weight | 791116.6 | |
| Non-Polymers* | Number of molecules | 290 |
| Total formula weight | 8801.9 | |
| All* | Total formula weight | 799918.5 |
