2VQE
Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 16S RRNA | polymer | 1522 | 493958.3 | 1 | THERMUS THERMOPHILUS | ||
2 | B | 30S RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) In PDB | THERMUS THERMOPHILUS | |
3 | C | 30S RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | THERMUS THERMOPHILUS | |
4 | D | 30S RIBOSOMAL PROTEIN S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | THERMUS THERMOPHILUS | |
5 | E | 30S RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | THERMUS THERMOPHILUS | |
6 | F | 30S RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | THERMUS THERMOPHILUS | TS9 |
7 | G | 30S RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) In PDB | THERMUS THERMOPHILUS | |
8 | H | 30S RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | THERMUS THERMOPHILUS | |
9 | I | 30S RIBOSOMAL PROTEIN S9 | polymer | 128 | 14429.7 | 1 | UniProt (P62669) Pfam (PF00380) UniProt (by SIFTS) (P80374) In PDB | THERMUS THERMOPHILUS | |
10 | J | 30S RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | THERMUS THERMOPHILUS | |
11 | K | 30S RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) In PDB | THERMUS THERMOPHILUS | |
12 | L | 30S RIBOSOMAL PROTEIN S12 | polymer | 135 | 14920.8 | 1 | UniProt (Q5SHN3) Pfam (PF00164) In PDB | THERMUS THERMOPHILUS | |
13 | M | 30S RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) In PDB | THERMUS THERMOPHILUS | |
14 | N | 30S RIBOSOMAL PROTEIN S14 TYPE Z | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | THERMUS THERMOPHILUS | 30S RIBOSOMAL PROTEIN S14 |
15 | O | 30S RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | THERMUS THERMOPHILUS | |
16 | P | 30S RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | THERMUS THERMOPHILUS | |
17 | Q | 30S RIBOSOMAL PROTEIN S17 | polymer | 105 | 12324.7 | 1 | UniProt (P24321) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB | THERMUS THERMOPHILUS | |
18 | R | 30S RIBOSOMAL PROTEIN S18 | polymer | 88 | 10244.3 | 1 | UniProt (P80382) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) In PDB | THERMUS THERMOPHILUS | |
19 | S | 30S RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | THERMUS THERMOPHILUS | |
20 | T | 30S RIBOSOMAL PROTEIN S20 | polymer | 106 | 11722.1 | 1 | UniProt (P62661) Pfam (PF01649) UniProt (by SIFTS) (P80380) In PDB | THERMUS THERMOPHILUS | |
21 | U | 30S RIBOSOMAL PROTEIN THX | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | THERMUS THERMOPHILUS | S31 |
22 | X | 5'-R(*UP*UP*AP*AP*AP*AP)-3' | polymer | 6 | 1884.2 | 1 | THERMUS THERMOPHILUS | RNA | |
23 | Y | 5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3' | polymer | 17 | 5548.4 | 1 | THERMUS THERMOPHILUS | RNA | |
24 | A, M, N, Q, B... | MAGNESIUM ION | non-polymer | 24.3 | 206 | Chemie (MG) | |||
25 | A, N, P, R, T... | POTASSIUM ION | non-polymer | 39.1 | 62 | Chemie (K) | |||
26 | A | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) | |||
27 | N, D | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 23 |
Total formula weight | 791100.6 | |
Non-Polymers* | Number of molecules | 271 |
Total formula weight | 8177.4 | |
All* | Total formula weight | 799278.0 |