2VKD
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF LETHAL TOXIN FROM CLOSTRIDIUM SORDELLII IN COMPLEX WITH UDP-GLC AND MANGANESE ION
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | CYTOTOXIN L | polymer | 546 | 63606.7 | 3 | UniProt (Q46342) | CLOSTRIDIUM SORDELLII | LETHAL TOXIN |
| 2 | D, F, G, H, J (A, B, C) | MANGANESE (II) ION | non-polymer | 54.9 | 5 | Chemie (MN) PubChem (27854) | |||
| 3 | E, I, K (A, B, C) | URIDINE-5'-DIPHOSPHATE-GLUCOSE | non-polymer | 566.3 | 3 | Chemie (UPG) PubChem (16667381) PubChem (20776702) PubChem (20776703) PubChem (1166) PubChem (16760700) PubChem (439156) PubChem (20776705) PubChem (25011746) PubChem (20776706) PubChem (23724458) PubChem (448801) PubChem (45109771) PubChem (46226441) PubChem (46936243) PubChem (53477679) PubChem (56845790) PubChem (58538034) PubChem (59720988) PubChem (56650783) PubChem (56846106) PubChem (8629) PubChem (18068) PubChem (88869506) PubChem (88869507) PubChem (88869743) PubChem (88870643) PubChem (88883029) PubChem (88910951) PubChem (88941526) PubChem (89321600) PubChem (89360378) PubChem (6857540) PubChem (89847362) PubChem (90056247) PubChem (439158) PubChem (90950359) PubChem (91746280) PubChem (448873) PubChem (640055) PubChem (92974126) PubChem (92974128) PubChem (92974129) PubChem (93535589) PubChem (12133414) PubChem (13008857) PubChem (13987142) PubChem (92328335) PubChem (92974127) PubChem (6857410) PubChem (124933210) PubChem (102429624) PubChem (129850353) PubChem (11734460) PubChem (124933209) PubChem (134736387) PubChem (134736388) PubChem (155893098) PubChem (158571248) PubChem (162920685) PubChem (138911444) PubChem (168265389) PubChem (162920683) PubChem (162920684) PubChem (163626061) PubChem (166642644) PubChem (168720052) PubChem (174027848) | |||
| 4 | L, M, N (A, B, C) | water | water | 18.0 | 148 | Chemie (HOH) |
Sequence modifications
A, B, C: 1 - 546 (UniProt: Q46342)
| PDB | External Database | Details |
|---|---|---|
| Ala 13 | Val 13 | engineered mutation |
| Met 289 | Ile 289 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 190820.2 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 1973.6 | |
| All* | Total formula weight | 192793.8 |
