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2VGK

Crystal structure of Actinomadura R39 DD-peptidase complexed with a peptidoglycan-mimetic cephalosporin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
D-ALANYL-D-ALANINE CARBOXYPEPTIDASEpolymer48950083.84UniProt (P39045)
Pfam (PF02113)
ACTINOMADURA SP.DD-PEPTIDASE, DD-CARBOXYPEPTIDASE
2E, M, S
(A, B, C)
(2R)-2-AMINO-7-{[(1R)-1-CARBOXYETHYL]AMINO}-7-OXOHEPTANOIC ACIDnon-polymer246.33Chemie (REZ)
3AA, BA, CA, F, G...
(D, A, B, C)
SULFATE IONnon-polymer96.120Chemie (SO4)
4DA, EA, K, L
(D, A)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
5FA, GA, HA, IA
(A, B, C, D)
waterwater18.0495Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight200335.2
Non-Polymers*Number of molecules27
Total formula weight2757.3
All*Total formula weight203092.5
*Water molecules are not included.

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PDB entries from 2025-07-02

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