2V89
Crystal structure of RAG2-PHD finger in complex with H3K4me3 peptide at 1.1A resolution
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | VDJ RECOMBINATION-ACTIVATING PROTEIN 2 | polymer | 82 | 9360.5 | 2 | UniProt (P21784) Pfam (PF13341) | MUS MUSCULUS (HOUSE MOUSE) | RAG2, RAG2-PHD FINGER |
| 2 | C, D (D, E) | HISTONE H3 | polymer | 10 | 1090.3 | 2 | UniProt (Q5TEC6) UniProt (by SIFTS) (P68431) | HOMO SAPIENS | H3K4ME3 PEPTIDE |
| 3 | E, F, G, H (A, B) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 4 | I, J, K, L (A, B, D, E) | water | water | 18.0 | 319 | Chemie (HOH) |
Sequence modifications
A, B: 1414 - 1487 (UniProt: P21784)
D, E: 3001 - 3010 (UniProt: Q5TEC6)
| PDB | External Database | Details |
|---|---|---|
| Gly 1406 | - | expression tag |
| Pro 1407 | - | expression tag |
| Leu 1408 | - | expression tag |
| Gly 1409 | - | expression tag |
| Ser 1410 | - | expression tag |
| Pro 1411 | - | expression tag |
| Glu 1412 | - | expression tag |
| Phe 1413 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ala 3008 | Arg 9 | conflict |
| Ala 3010 | Ser 10 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 20901.6 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 261.6 | |
| All* | Total formula weight | 21163.2 |
