2UXC
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 16S RIBOSOMAL RNA | polymer | 1522 | 493958.3 | 1 | THERMUS THERMOPHILUS | ||
2 | B | RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) In PDB | THERMUS THERMOPHILUS | |
3 | C | RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | THERMUS THERMOPHILUS | |
4 | D | RIBOSOMAL PROTEIN S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | THERMUS THERMOPHILUS | |
5 | E | RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | THERMUS THERMOPHILUS | |
6 | F | RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | THERMUS THERMOPHILUS | |
7 | G | RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) In PDB | THERMUS THERMOPHILUS | |
8 | H | RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | THERMUS THERMOPHILUS | |
9 | I | RIBOSOMAL PROTEIN S9 | polymer | 128 | 14429.7 | 1 | UniProt (P80374) Pfam (PF00380) In PDB | THERMUS THERMOPHILUS | |
10 | J | RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | THERMUS THERMOPHILUS | |
11 | K | RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) In PDB | THERMUS THERMOPHILUS | |
12 | L | RIBOSOMAL PROTEIN S12 | polymer | 135 | 14920.8 | 1 | UniProt (Q5SHN3) Pfam (PF00164) In PDB | THERMUS THERMOPHILUS | |
13 | M | RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) In PDB | THERMUS THERMOPHILUS | |
14 | N | RIBOSOMAL PROTEIN S14 | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | THERMUS THERMOPHILUS | |
15 | O | RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | THERMUS THERMOPHILUS | |
16 | P | RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | THERMUS THERMOPHILUS | |
17 | Q | RIBOSOMAL PROTEIN S17 | polymer | 105 | 12324.7 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB | THERMUS THERMOPHILUS | |
18 | R | RIBOSOMAL PROTEIN S18 | polymer | 88 | 10258.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | THERMUS THERMOPHILUS | |
19 | S | RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | THERMUS THERMOPHILUS | |
20 | T | RIBOSOMAL PROTEIN S20 | polymer | 106 | 11722.1 | 1 | UniProt (P80380) Pfam (PF01649) In PDB | THERMUS THERMOPHILUS | |
21 | U | RIBOSOMAL PROTEIN THX | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | THERMUS THERMOPHILUS | |
22 | X | A-SITE MESSENGER RNA FRAGMENT CGGG | polymer | 18 | 5772.5 | 1 | SYNTHETIC CONSTRUCT | ||
23 | Y | ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACGA | polymer | 5 | 1523.9 | 1 | SYNTHETIC CONSTRUCT | ||
24 | A | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) | |||
25 | A | MAGNESIUM ION | non-polymer | 24.3 | 192 | Chemie (MG) | |||
26 | A | POTASSIUM ION | non-polymer | 39.1 | 26 | Chemie (K) | |||
27 | A | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
B: 1 - 1 (PDB: 2UXC)
B: 2 - 256 (UniProt: P80371)
C: 1 - 1 (PDB: 2UXC)
C: 2 - 239 (UniProt: P80372)
D: 1 - 1 (PDB: 2UXC)
D: 2 - 209 (UniProt: P80373)
E: 1 - 1 (PDB: 2UXC)
E: 2 - 162 (UniProt: Q5SHQ5)
G: 1 - 1 (PDB: 2UXC)
G: 2 - 156 (UniProt: P17291)
I: 1 - 128 (UniProt: P80374)
J: 1 - 1 (PDB: 2UXC)
J: 2 - 105 (UniProt: Q5SHN7)
K: 1 - 1 (PDB: 2UXC)
K: 2 - 129 (UniProt: P80376)
L: 1 - 4 (PDB: 2UXC)
L: 5 - 135 (UniProt: Q5SHN3)
M: 1 - 1 (PDB: 2UXC)
M: 2 - 126 (UniProt: P80377)
N: 1 - 1 (PDB: 2UXC)
N: 2 - 61 (UniProt: Q5SHQ1)
O: 1 - 1 (PDB: 2UXC)
O: 2 - 89 (UniProt: Q5SJ76)
Q: 1 - 1 (PDB: 2UXC)
Q: 2 - 105 (UniProt: Q5SHP7)
R: 1 - 1 (PDB: 2UXC)
R: 2 - 88 (UniProt: Q5SLQ0)
S: 1 - 1 (PDB: 2UXC)
S: 2 - 93 (UniProt: Q5SHP2)
T: 1 - 1 (PDB: 2UXC)
T: 2 - 106 (UniProt: P80380)
U: 1 - 1 (PDB: 2UXC)
U: 2 - 27 (UniProt: Q5SIH3)
B: 2 - 256 (UniProt: P80371)
C: 1 - 1 (PDB: 2UXC)
C: 2 - 239 (UniProt: P80372)
D: 1 - 1 (PDB: 2UXC)
D: 2 - 209 (UniProt: P80373)
E: 1 - 1 (PDB: 2UXC)
E: 2 - 162 (UniProt: Q5SHQ5)
G: 1 - 1 (PDB: 2UXC)
G: 2 - 156 (UniProt: P17291)
I: 1 - 128 (UniProt: P80374)
PDB | External Database | Details |
---|---|---|
Arg 58 | His 58 | conflict |
J: 2 - 105 (UniProt: Q5SHN7)
K: 1 - 1 (PDB: 2UXC)
K: 2 - 129 (UniProt: P80376)
L: 1 - 4 (PDB: 2UXC)
L: 5 - 135 (UniProt: Q5SHN3)
M: 1 - 1 (PDB: 2UXC)
M: 2 - 126 (UniProt: P80377)
N: 1 - 1 (PDB: 2UXC)
N: 2 - 61 (UniProt: Q5SHQ1)
O: 1 - 1 (PDB: 2UXC)
O: 2 - 89 (UniProt: Q5SJ76)
Q: 1 - 1 (PDB: 2UXC)
Q: 2 - 105 (UniProt: Q5SHP7)
PDB | External Database | Details |
---|---|---|
Gln 96 | Glu 95 | conflict |
R: 2 - 88 (UniProt: Q5SLQ0)
S: 1 - 1 (PDB: 2UXC)
S: 2 - 93 (UniProt: Q5SHP2)
T: 1 - 1 (PDB: 2UXC)
T: 2 - 106 (UniProt: P80380)
PDB | External Database | Details |
---|---|---|
Val 41 | Ile 40 | conflict |
U: 2 - 27 (UniProt: Q5SIH3)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 23 |
Total formula weight | 790978.4 | |
Non-Polymers* | Number of molecules | 221 |
Total formula weight | 6429.6 | |
All* | Total formula weight | 797408.0 |