2UUC
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S Ribosomal RNA | polymer | 1522 | 493958.3 | 1 | THERMUS THERMOPHILUS | ||
| 2 | B (B) | 30S RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) | THERMUS THERMOPHILUS | |
| 3 | C (C) | 30S RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | THERMUS THERMOPHILUS | |
| 4 | D (D) | 30S RIBOSOMAL PROTEIN S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | THERMUS THERMOPHILUS | |
| 5 | E (E) | 30S RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | THERMUS THERMOPHILUS | |
| 6 | F (F) | 30S RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | THERMUS THERMOPHILUS | TS9 |
| 7 | G (G) | 30S RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | THERMUS THERMOPHILUS | |
| 8 | H (H) | 30S RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | THERMUS THERMOPHILUS | |
| 9 | I (I) | 30S RIBOSOMAL PROTEIN S9 | polymer | 128 | 14410.6 | 1 | UniProt (P80374) Pfam (PF00380) | THERMUS THERMOPHILUS | |
| 10 | J (J) | 30S RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | THERMUS THERMOPHILUS | |
| 11 | K (K) | 30S RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | THERMUS THERMOPHILUS | |
| 12 | L (L) | 30S RIBOSOMAL PROTEIN S12 | polymer | 135 | 14920.8 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | THERMUS THERMOPHILUS | |
| 13 | M (M) | 30S RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) | THERMUS THERMOPHILUS | |
| 14 | N (N) | 30S RIBOSOMAL PROTEIN S14 | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | THERMUS THERMOPHILUS | |
| 15 | O (O) | 30S RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | THERMUS THERMOPHILUS | |
| 16 | P (P) | 30S RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | THERMUS THERMOPHILUS | |
| 17 | Q (Q) | 30S RIBOSOMAL PROTEIN S17 | polymer | 105 | 12325.7 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | THERMUS THERMOPHILUS | |
| 18 | R (R) | 30S RIBOSOMAL PROTEIN S18 | polymer | 88 | 10258.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | THERMUS THERMOPHILUS | |
| 19 | S (S) | 30S RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | THERMUS THERMOPHILUS | |
| 20 | T (T) | 30S RIBOSOMAL PROTEIN S20 | polymer | 106 | 11736.1 | 1 | UniProt (P80380) Pfam (PF01649) | THERMUS THERMOPHILUS | |
| 21 | U (U) | 30S RIBOSOMAL PROTEIN THX | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | THERMUS THERMOPHILUS | |
| 22 | V (X) | 5'-R(*GP*UP*AP*AP*AP*AP)-3' | polymer | 6 | 1923.2 | 1 | synthetic construct | RNA | |
| 23 | W (Y) | 5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3' | polymer | 17 | 5490.3 | 1 | RNA | ||
| 24 | X (A) | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) | |||
| 25 | AA, AB, AC, AD, AE... (A, K, M, N, Q...) | MAGNESIUM ION | non-polymer | 24.3 | 184 | Chemie (MG) | |||
| 26 | AH, AI, BH, BI, CH... (A, Q, E, G) | POTASSIUM ION | non-polymer | 39.1 | 56 | Chemie (K) | |||
| 27 | CJ, SI (N, D) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
B: 1 - 1 (PDB: 2UUC)
B: 2 - 256 (UniProt: P80371)
C: 1 - 1 (PDB: 2UUC)
C: 2 - 239 (UniProt: P80372)
D: 1 - 1 (PDB: 2UUC)
D: 2 - 209 (UniProt: P80373)
E: 1 - 1 (PDB: 2UUC)
E: 2 - 162 (UniProt: Q5SHQ5)
G: 1 - 1 (PDB: 2UUC)
G: 2 - 156 (UniProt: P17291)
J: 1 - 1 (PDB: 2UUC)
J: 2 - 105 (UniProt: Q5SHN7)
K: 1 - 1 (PDB: 2UUC)
K: 2 - 129 (UniProt: P80376)
L: 1 - 4 (PDB: 2UUC)
L: 5 - 135 (UniProt: Q5SHN3)
M: 1 - 1 (PDB: 2UUC)
M: 2 - 126 (UniProt: P80377)
N: 1 - 1 (PDB: 2UUC)
N: 2 - 61 (UniProt: Q5SHQ1)
O: 1 - 1 (PDB: 2UUC)
O: 2 - 89 (UniProt: Q5SJ76)
Q: 1 - 1 (PDB: 2UUC)
Q: 2 - 105 (UniProt: Q5SHP7)
R: 1 - 1 (PDB: 2UUC)
R: 2 - 88 (UniProt: Q5SLQ0)
S: 1 - 1 (PDB: 2UUC)
S: 2 - 93 (UniProt: Q5SHP2)
T: 1 - 1 (PDB: 2UUC)
T: 2 - 106 (UniProt: P80380)
U: 1 - 1 (PDB: 2UUC)
U: 2 - 27 (UniProt: Q5SIH3)
B: 2 - 256 (UniProt: P80371)
C: 1 - 1 (PDB: 2UUC)
C: 2 - 239 (UniProt: P80372)
D: 1 - 1 (PDB: 2UUC)
D: 2 - 209 (UniProt: P80373)
E: 1 - 1 (PDB: 2UUC)
E: 2 - 162 (UniProt: Q5SHQ5)
G: 1 - 1 (PDB: 2UUC)
G: 2 - 156 (UniProt: P17291)
J: 1 - 1 (PDB: 2UUC)
J: 2 - 105 (UniProt: Q5SHN7)
K: 1 - 1 (PDB: 2UUC)
K: 2 - 129 (UniProt: P80376)
L: 1 - 4 (PDB: 2UUC)
L: 5 - 135 (UniProt: Q5SHN3)
M: 1 - 1 (PDB: 2UUC)
M: 2 - 126 (UniProt: P80377)
N: 1 - 1 (PDB: 2UUC)
N: 2 - 61 (UniProt: Q5SHQ1)
O: 1 - 1 (PDB: 2UUC)
O: 2 - 89 (UniProt: Q5SJ76)
Q: 1 - 1 (PDB: 2UUC)
Q: 2 - 105 (UniProt: Q5SHP7)
R: 1 - 1 (PDB: 2UUC)
R: 2 - 88 (UniProt: Q5SLQ0)
S: 1 - 1 (PDB: 2UUC)
S: 2 - 93 (UniProt: Q5SHP2)
T: 1 - 1 (PDB: 2UUC)
T: 2 - 106 (UniProt: P80380)
U: 1 - 1 (PDB: 2UUC)
U: 2 - 27 (UniProt: Q5SIH3)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 23 |
| Total formula weight | 791091.6 | |
| Non-Polymers* | Number of molecules | 243 |
| Total formula weight | 7408.1 | |
| All* | Total formula weight | 798499.6 |
