2RDE

Crystal structure of VCA0042 complexed with c-di-GMP

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B	Uncharacterized protein VCA0042	polymer	251	28246.5	2	UniProt (A5F1K1) Pfam (PF12945) Pfam (PF07238) UniProt (by SIFTS) (A0A0H3ADR8) In PDB	Vibrio cholerae
2	A, B	9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)	non-polymer		690.4	2	Chemie (C2E)
3		water	water		18.0	541	Chemie (HOH)

Sequence modifications

A, B: 23 - 252 (UniProt: A5F1K1)

PDB	External Database	Details
Met 2	-	expression tag
Gly 3	-	expression tag
Ser 4	-	expression tag
Ser 5	-	expression tag
His 6	-	expression tag
His 7	-	expression tag
His 8	-	expression tag
His 9	-	expression tag
His 10	-	expression tag
His 11	-	expression tag
Ser 12	-	expression tag
Ser 13	-	expression tag
Gly 14	-	expression tag
Leu 15	-	expression tag
Val 16	-	expression tag
Pro 17	-	expression tag
Arg 18	-	expression tag
Gly 19	-	expression tag
Ser 20	-	expression tag
His 21	-	expression tag
Met 22	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	56492.9
Non-Polymers*	Number of molecules	2
	Total formula weight	1380.8
All*	Total formula weight	57873.7

*Water molecules are not included.