2RDE

Crystal structure of VCA0042 complexed with c-di-GMP

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B (A, B)	Uncharacterized protein VCA0042	polymer	251	28246.5	2	UniProt (A5F1K1) UniProt (by SIFTS) (A0A0H3ADR8)	Vibrio cholerae
2	C, D (A, B)	9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)	non-polymer		690.4	2	Chemie (C2E) PubChem (135440063) PubChem (135566344) PubChem (136437725) PubChem (136465801) PubChem (136503951) PubChem (146177770) PubChem (135566464) PubChem (135625254) PubChem (135867623) PubChem (135975628) PubChem (136177399) PubChem (136443483) PubChem (137221491) PubChem (137295286) PubChem (148921766) PubChem (148921769) PubChem (173716374) PubChem (174009991) PubChem (164708340) PubChem (168270823)
3	E, F (A, B)	water	water		18.0	541	Chemie (HOH)

Sequence modifications

A, B: 23 - 252 (UniProt: A5F1K1)

PDB	External Database	Details
Met 2	-	expression tag
Gly 3	-	expression tag
Ser 4	-	expression tag
Ser 5	-	expression tag
His 6	-	expression tag
His 7	-	expression tag
His 8	-	expression tag
His 9	-	expression tag
His 10	-	expression tag
His 11	-	expression tag
Ser 12	-	expression tag
Ser 13	-	expression tag
Gly 14	-	expression tag
Leu 15	-	expression tag
Val 16	-	expression tag
Pro 17	-	expression tag
Arg 18	-	expression tag
Gly 19	-	expression tag
Ser 20	-	expression tag
His 21	-	expression tag
Met 22	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	56492.9
Non-Polymers*	Number of molecules	2
	Total formula weight	1380.8
All*	Total formula weight	57873.7

*Water molecules are not included.