2QU5
Crystal structure of the VEGFR2 kinase domain in complex with a benzimidazole inhibitor
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Vascular endothelial growth factor receptor 2 | polymer | 314 | 36284.6 | 1 | UniProt (P35968) Pfam (PF07714) | Homo sapiens (human) | VEGFR-2, Kinase insert domain receptor, Protein-tyrosine kinase receptor Flk-1, CD309 antigen |
| 2 | B (A) | 4-[[2-[[4-chloro-3-(trifluoromethyl)phenyl]amino]-3H-benzimidazol-5-yl]oxy]-N-methyl-pyridine-2-carboxamide | non-polymer | 461.8 | 1 | Chemie (276) | |||
| 3 | C (A) | water | water | 18.0 | 6 | Chemie (HOH) |
Sequence modifications
A: 815 - 939 (UniProt: P35968)
A: 990 - 1171 (UniProt: P35968)
| PDB | External Database | Details |
|---|---|---|
| Ala 817 | Cys 817 | engineered mutation |
| Thr 916 | Val 916 | engineered mutation |
| Arg 1172 | - | expression tag |
| His 1173 | - | expression tag |
| His 1174 | - | expression tag |
| His 1175 | - | expression tag |
| His 1176 | - | expression tag |
| His 1177 | - | expression tag |
| His 1178 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Val 990 | Glu 990 | engineered mutation |
| Ptr 1054 | Tyr 1054 | modified residue |
| Ptr 1059 | Tyr 1059 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 36284.6 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 461.8 | |
| All* | Total formula weight | 36746.4 |






