2PO6
Crystal structure of CD1d-lipid-antigen complexed with Beta-2-Microglobulin, NKT15 Alpha-Chain and NKT15 Beta-Chain
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E (A, E) | T-cell surface glycoprotein CD1d | polymer | 278 | 31758.8 | 2 | UniProt (P15813) Pfam (PF16497) Pfam (PF07654) | Homo sapiens (human) | CD1d antigen, R3G1 |
| 2 | B, F (B, F) | Beta-2-microglobulin | polymer | 99 | 11748.2 | 2 | UniProt (P61769) Pfam (PF07654) | Homo sapiens (human) | |
| 3 | C, G (C, G) | NKT15 alpha-chain | polymer | 204 | 22664.0 | 2 | UniProt (Q6PIZ8) Pfam (PF09291) UniProt (by SIFTS) (P01848) | Homo sapiens (human) | |
| 4 | D, H (D, H) | NKT15 beta-chain | polymer | 244 | 27772.9 | 2 | UniProt (Q6GMR4) | Homo sapiens (human) | |
| 5 | I (I) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 383.3 | 1 | In PDB GlyTouCan (G90333CG) | |||
| 6 | J (J) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 7 | K, L, N (A, E) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 8 | M, O (C, E) | N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE | non-polymer | 858.3 | 2 | Chemie (AGH) PubChem (22178808) PubChem (21148162) PubChem (44567800) PubChem (44567801) PubChem (44567802) PubChem (24893977) PubChem (46782034) PubChem (44297456) PubChem (44567799) PubChem (57484594) PubChem (53386145) PubChem (57874564) PubChem (58619337) PubChem (67145682) PubChem (68150680) PubChem (67742136) PubChem (69295696) PubChem (73352931) PubChem (2826713) PubChem (3036154) PubChem (89974087) PubChem (71012806) PubChem (90914245) PubChem (89975850) PubChem (90284806) PubChem (90977498) PubChem (101712282) PubChem (117649187) PubChem (101580079) PubChem (9919092) PubChem (126544764) PubChem (135151829) PubChem (15297626) PubChem (136212762) PubChem (164041029) PubChem (145716231) PubChem (145716904) PubChem (145731812) PubChem (172946534) PubChem (162959619) PubChem (172491662) PubChem (172909643) |
Sequence modifications
A, E: 6 - 277 (UniProt: P15813)
| PDB | External Database | Details |
|---|---|---|
| His 278 | - | expression tag |
| His 279 | - | expression tag |
| His 280 | - | expression tag |
| His 281 | - | expression tag |
| His 282 | - | expression tag |
| His 283 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 187887.6 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 807.8 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 2380.3 | |
| All* | Total formula weight | 191075.6 |
