2PED
Crystallographic model of 9-cis-rhodopsin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | Rhodopsin | polymer | 349 | 39057.5 | 2 | UniProt (P02699) Pfam (PF10413) Pfam (PF00001) In PDB | Bos taurus (cattle) | |
| 2 | C | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G62182OO) | |||
| 3 | D, F | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 4 | E | beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G31886NL) | |||
| 5 | A, B | MERCURY (II) ION | non-polymer | 200.6 | 6 | Chemie (HG) | |||
| 6 | A, B | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) | |||
| 7 | A, B | RETINAL | non-polymer | 284.4 | 2 | Chemie (RET) | |||
| 8 | B, A | PALMITIC ACID | non-polymer | 256.4 | 6 | Chemie (PLM) | |||
| 9 | B, A | heptyl 1-thio-beta-D-glucopyranoside | non-polymer | 294.4 | 4 | Chemie (HTG) | |||
| 10 | B | HEPTANE-1,2,3-TRIOL | non-polymer | 148.2 | 1 | Chemie (HTO) | |||
| 11 | water | water | 18.0 | 108 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 78115.0 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 2184.0 | |
| Non-Polymers* | Number of molecules | 26 |
| Total formula weight | 5094.7 | |
| All* | Total formula weight | 85393.7 |
